Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq37 111 1e-19 seq92 96.9 3e-15 seq25 96.9 3e-15 seq1 89.7 5e-13 >seq37 Length=418716 Score = 111 bits (122), Expect = 1e-19 Identities = 330/502 (66%), Gaps = 19/502 (4%) Strand=Plus/Plus Query 47085 AAGGCCGAGTGGGCCATGAAGTACATT-GAAAACGAAAACGTCACTCTGGCCGAACGTTT 47143 ||||| || |||||| |||||| ||| | | || || | ||| | ||| | || || Sbjct 51357 AAGGCTGACTGGGCCCTGAAGTGGATTAGCGATCGCAA-CTCCACCTTTGCCCAGCGCTT 51415 Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGATATTTT 47202 ||| || || ||| || ||||| |||||||| || ||||| || | || || | Sbjct 51416 GATTGCCTTTGCCGCTGTGGAGGGTATCTTCTTCAGTGGT-GCTTTCGCATCTATCTTCT 51474 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 | || | || | ||||| ||||| || || ||||||||| ||||| | | Sbjct 51475 GGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTCCCGTG 51534 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTA-CAACACTAGAGTCGATCAA 47318 |||| || || || ||| |||||||||| || | || || | ||| ||| | | Sbjct 51535 ACGAGGGTCTTCATACCGACTTTGCCTGCCTGCTGTTCTCTCACCTGAAGAACCGACCCA 51594 Query 47319 --AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGG 47376 ||| || |||| | |||| || | || |||||| |||||| | Sbjct 51595 GTAAGGAGGTCGTGGAGGCGGTCATCGTC---------GATGCCGTCAAGATTGAGCAAG 51645 Query 47377 AGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAA 47436 |||| | | ||||| ||||| || | | || |||||||| | |||||| Sbjct 51646 AGTTCCTGACAGAGGCGCTGCCGTGCGCTCTGCTCGGCATGAACGCCAACCTGATGAAGC 51705 Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496 | |||||||| ||||| || ||||| |||||||| || || ||| | |||| Sbjct 51706 AATACATCGAGTTTGTTGCTGACCGTCTGCTCGTCGCTCTGGGTAATGAGAAGGTCTACC 51765 Query 47497 ACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTT 47556 | | || || ||||| || ||| | ||||| ||||||| |||||||||||||| | Sbjct 51766 GCTCTTCCAACCCGTTCGACTTCATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCT 51825 Query 47557 TCGAGAAGCGCGTCGGCGAATA 47578 | |||||||||||||| || || Sbjct 51826 TTGAGAAGCGCGTCGGTGATTA 51847 >seq92 Length=114681 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| ||| | || | || ||| || || || |||||||| Sbjct 39350 GCACCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCC 39409 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || ||||| || || || |||||| |||||||| || || Sbjct 39410 GAAAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGG 39469 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| || ||| Sbjct 39470 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCC 39529 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | || || || || || ||||| || || ||||||||| Sbjct 39530 ACCTCGAGGGTGATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 39580 >seq25 Length=549874 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||||||||| |||| | ||| || ||| || ||||| || ||| Sbjct 481952 GTCGACTCCTTTTGAATATTGTAGTCGCTTAGCGTACGTCCATCCTCCAGCTGCTTACCA 482011 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | || ||||| || ||||| || |||||||||||| |||||| ||| Sbjct 482012 GCAAAGATGAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATTTTGCTCTTC 482071 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | | || || || | || | || || || || || || Sbjct 482072 ACATTGTCGATGGTATCTGAAGATTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGCGTC 482131 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| || |||||| Sbjct 482132 TTCACAAATATTTGCATG 482149 >seq1 Length=1779776 Score = 89.7 bits (98), Expect = 5e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || ||||| ||| | || || || || ||||| || |||||| |||| Sbjct 1522658 TTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATA 1522599 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGAT-TTTCTGCTTGAGTTGTTC 127044 | |||||||| || ||||| ||||||||||||||| ||| || || || ||| || Sbjct 1522598 AGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTG-TC 1522540 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || ||||||| |||||| |||| || | || ||||| || || || || || || Sbjct 1522539 GATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGAA 1522480 Query 127105 AATCTGCA 127112 ||||||| Sbjct 1522479 GATCTGCA 1522472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499379441360