Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-20 >seq25 Length=549874 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || || ||||| ||||| || |||||||||| |||| || || Sbjct 482460 CACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCCGTCCTC 482519 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | |||| || |||||||| || ||||||||||| ||||| || Sbjct 482520 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTG 482579 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | |||||||||||||| || || | || | ||| | Sbjct 482580 GATCTTCGACTTTA-CGTTGTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGTCT 482638 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| ||||| || ||||| || |||||| Sbjct 482639 TACCGGTGAGAGTCTTGACAAAGATCTGCATC 482670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || |||||||| || || || || ||||| | |||| || || Sbjct 482167 CACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCGTCCTC 482226 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || || | |||| || |||||||| || ||||||||||||||||| || Sbjct 482227 GAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTG 482286 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | |||||||| ||||| || ||||| |||| ||| | Sbjct 482287 GATCTTCGACTTTA-CGTTGTCGATCGTGTCGGATGACTCAACCTCGAGCGTAATCGTCT 482345 Query 45310 TGCCGGTTAGAGTTTTTAC 45328 | || || | ||||| || Sbjct 482346 TTCCCGTCAAGGTTTTGAC 482364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001849640440