Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq13 141 1e-28 seq37 109 7e-19 >seq13 Length=863668 Score = 141 bits (156), Expect = 1e-28 Identities = 637/997 (64%), Gaps = 18/997 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | ||||| || ||||||||||| |||||||||||||| || | ||| Sbjct 288940 TAAATGTTTGAAGTGTAAGGTTCAAAGCACTCGTTGTTACCCAAGATCTGCGAGGTGCTA 288881 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || ||||| || ||||||||||| || ||||| | ||| | | | || | || Sbjct 288880 GCAGTTGGCATAGGAGCCATGAGAAGACTATTGCGTACACCATGCTGCTTGATCTGCTCT 288821 Query 116023 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGA 116080 ||||| || ||||||| | | | || | | ||||||||||| |||||| Sbjct 288820 TTGAGAGCAGCCCAGTCCCAAAGATCAGAGGGGGTAACA--TCCCACATATCGTACTGGA 288763 Query 116081 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 116140 |||| |||||||| | || || ||||| | || ||| | ||||| || | || | Sbjct 288762 GGATGCCTTGGGAAACAGGTGAACCCTCGTAAGTAGAATAAGTACCCTCCACTTTAGCAA 288703 Query 116141 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-T 116199 || || | || ||||| ||||| ||||| || || | || | | Sbjct 288702 TCTCCATTGATGCAGTCAAAGCAGCGTGGTACATAGTCTCGAAGATCTGCTTGTTGAGCT 288643 Query 116200 GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCT 116259 ||| | |||| || ||||| | | ||| | || ||| || |||||| Sbjct 288642 GCCGAG-CCTCTGGTGATTCAAAAGGCATGCGGAGGGCGAGGAAGGTATCGGCCAGACCT 288584 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA---CG 116316 |||||||| || ||||| || || || | |||||| || || || ||| | | Sbjct 288583 TGGACACCAAGACCAATAGGTCGGTGACGCATATTGCTGTTACGTGC---CTCAATAACA 288527 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || ||| || ||||| ||| | || ||||| | ||||| | || | ||| Sbjct 288526 GGGTAATGGTTTGCGTCGATGACCTTGTTCAGATTGCGGACAACAACTTGAGTAACCTCA 288467 Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 || ||||||| | | | | | || || | | || || | || ||||| || Sbjct 288466 TGTAGCTTTTGGAAGTTATAGCTCTCTGTGTGATAATCCACGAATGATGGCAGGGCCATA 288407 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || || || || || |||| ||||| | | ||||| || || || || || Sbjct 288406 GATGCTAGGTTGCAAACAGCAACTTCATCTGGGGCTGAATACTCGATGATCTCGGTGCAG 288347 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA-CACGCATC 116555 | ||| || || || ||||| || ||||| || || ||| || || | ||| Sbjct 288346 AGATTGGAGCTGCGGATTGTGCCTAAATTCTTCTGGTTGCTCTTGCGATTGGCATG-ATC 288288 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614 |||||||||||| | || | || || || || || | | ||| || || | ||| | Sbjct 288287 CTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGTCTGAGCTTCGAGGATGGCATACCAGAG 288228 Query 116615 CATCGGCGGCTGGCACAG-TGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGG 116673 | || | | || | ||||| | | || ||||| |||| ||| || |||||| Sbjct 288227 CTTCTGAGCCTTTATCTTCTGGCG--GCCGCGACCCTCAGCCTCATACGTTTCGTAGAGA 288170 Query 116674 GCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 ||||||||||| ||||| | || | || || || || || || || | || Sbjct 288169 GCCTCAAACTCATCACCGTAGACATCAGCAAGGCCGGGGCACTCATTCGGGCACATCAGC 288110 Query 116734 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 | ||| | || || || || |||||||||||||| || |||||||| || ||| || Sbjct 288109 GTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGCCAAG 288050 Query 116794 AAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 ||||| || ||| |||| |||| || | ||| ||||| |||| || | || || Sbjct 288049 AAGAGGTCACGAGCGCGAACTTCCTCCTTCCCATGATTCTTTCGCAGATCTAGGAACTCA 287990 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | | ||||| |||||| ||||| || || | |||| Sbjct 287989 AACACATCCGAGTGCCATGGTTCAAGATAGATGGCGA 287953 >seq37 Length=418716 Score = 109 bits (120), Expect = 7e-19 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || ||||||||||||||||||||||| || || ||||| ||| || ||||| ||||| Sbjct 51547 TGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGGCATCAGACCA 51488 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | |||||| || | || | ||| ||||||||| ||||||||| Sbjct 51487 CGCTTCTTGAGCCAGAAGATAGATGCGAAAGCACCACTGAAGAAGATACCCTCCACAGCG 51428 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAACCACTTCATC 127708 || || |||| | |||| |||||||| ||| || ||| || |||||||| Sbjct 51427 GCAAAGGCAATCAAGCGCTGGGCAAAGG---TGGAGTTGCGATCGCTAATCCACTTCAGG 51371 Query 127709 GCCCACTGTGCCTTTTT 127725 ||||| | ||||| || Sbjct 51370 GCCCAGTCAGCCTTCTT 51354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505367147240