Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq25 141 2e-28 seq92 109 1e-18 seq1 95.1 3e-14 >seq25 Length=549874 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || ||||| || |||||||| |||| |||||| || | || Sbjct 482449 CGAAGACGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTT 482508 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| |||||||||||||| ||| ||| ||| Sbjct 482509 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCT 482568 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || ||||| Sbjct 482569 TCCTTATCCTGGATCTTCGACTTTACGTTGTCGATTGTGTCGGAAGACTCCACCTCCAAG 482628 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| |||||||| || ||||| || || Sbjct 482629 GTGATCGTCTTACCGGTGAGAGTCTTGACAAAGATCTG 482666 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | |||||||||||||| | |||||||| | || | |||||| Sbjct 481937 AGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTTAGCGTACGTCCATCC 481996 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||||||||| |||||||||||| || || || ||| Sbjct 481997 TCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCC 482056 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || |||||| |||| ||| |||| | ||| || |||| ||||| ||| Sbjct 482057 TGGATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCACCTCCAGAGTGATGGTC 482116 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||| ||||| Sbjct 482117 TTTCCAGTGAGCGTCTTCACAAATATTTG 482145 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || || |||||||| || || | |||||||||| || ||| Sbjct 481700 CGAAGACGAAGGACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTCAGAGTG 481759 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || || ||||||||||| || |||||||| || || Sbjct 481760 CGCCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGGATACCC 481819 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| ||| |||| | ||| || |||| Sbjct 481820 TCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTATCTGACGATTCCACTTCCAGG 481879 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | || ||||| || ||||| Sbjct 481880 GTGATCGTCTTCCCTGTCAATGTCTTCACGAAGATTTG 481917 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||||||||| || || ||||| || | ||||||||| || || Sbjct 482156 CGAAGACGGAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTT 482215 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || || || || ||||||||||| ||| ||| ||| Sbjct 482216 CGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCT 482275 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||| ||| |||| ||||| | || || || || | | Sbjct 482276 TCTTTATCCTGGATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACTCAACCTCGAGC 482335 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || |||||||| ||||| | ||||| || Sbjct 482336 GTAATCGTCTTTCCCGTCAAGGTTTTGAC 482364 >seq92 Length=114681 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||| |||| |||||| || | | || Sbjct 39359 CGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAAAGGGTA 39418 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| ||||| || ||||||||||| || || || Sbjct 39419 CGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCC 39478 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 39479 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCGAGG 39538 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| ||||| || || || || Sbjct 39539 GTGATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTG 39576 >seq1 Length=1779776 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||| | | |||| || || || |||||||| || ||||||| Sbjct 1522660 CCTTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 1522601 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||||||||| ||| || || || ||||| ||||| || || | Sbjct 1522600 TAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGT 1522541 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | ||| || ||||| |||||||| || || || | Sbjct 1522540 CGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGA 1522481 Query 199620 AAATTTG 199626 | || || Sbjct 1522480 AGATCTG 1522474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178917989921013