Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq92 147 2e-30 seq25 134 2e-26 seq1 127 2e-24 >seq92 Length=114681 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| || || | || |||||||| ||||| ||||| || || || || || | Sbjct 39364 ACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCC 39423 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||||||||| || |||| |||||||||||| | || | || |||||| Sbjct 39424 ATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 39483 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | |||||||| || ||||| || | ||||| Sbjct 39484 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGAT 39543 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || ||||| || ||||| ||||| Sbjct 39544 AGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 39579 >seq25 Length=549874 Score = 134 bits (148), Expect = 2e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| |||||| ||||| ||||| ||| || || || | Sbjct 482454 ACGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCC 482513 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||||||||| |||| ||||||||||||| || | || ||||| Sbjct 482514 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTT 482573 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||||||| ||| | ||| | | | |||||| || ||||| |||| |||| Sbjct 482574 ATCCTGGATCTTCGACTTTA-CGTTGTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGA 482632 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || || || || || || || |||||||| ||||| ||| Sbjct 482633 TCGTCTTACCGGTGAGAGTCTTGACAAAGATCTGCATCTTG 482673 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||||||| ||||||||| |||||||||||| ||| || || | || || Sbjct 481940 ACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTTAGCGTACGTCCATCCTCC 481999 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | || |||||||| | || | | |||||||||| | Sbjct 482000 AGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGG 482059 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || |||| | | | | || || |||||||| |||| |||||||| || Sbjct 482060 ATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCACCTCCAGAGTGATGGTCTTT 482119 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || ||||| |||||||| Sbjct 482120 CCAGTGAGCGTCTTCACAAATATTTGCAT 482148 Score = 102 bits (112), Expect = 9e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||| || || || |||| |||||||||||||| || || Sbjct 482186 TCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAA 482245 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||||||||| || | || || || ||| ||||||| ||| | ||| Sbjct 482246 ATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTCGACTTTA-CGTT 482304 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||||| || || || || | ||| || || || ||||||| ||||| || Sbjct 482305 GTCGATCGTGTCGGATGACTCAACCTCGAGCGTAATCGTCTTTCCCGTCAAGGTTTTGAC 482364 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| || ||| || || || |||||||| ||||||||| | || || Sbjct 481712 ACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCCTCC 481771 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | || || ||||| | || | | |||||||||| | Sbjct 481772 AGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGG 481831 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||| | | | | || || ||||||||| |||| ||||| || || Sbjct 481832 ATCTTGCTCTTCACATTGTCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGTCTTC 481891 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || ||||||||||| Sbjct 481892 CCTGTCAATGTCTTCACGAAGATTTGCAT 481920 >seq1 Length=1779776 Score = 127 bits (140), Expect = 2e-24 Identities = 145/191 (76%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||||||||| ||||||||||| || || || |||| |||||||||||||| ||||| | Sbjct 1522660 CCTTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 1522601 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT-CTTCTT-GAGCGT 46521 | | ||||||||||| | || | || |||||||||| |||||| ||| || | || Sbjct 1522600 TAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGT 1522541 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 || | |||||| || || || || | ||| ||||| |||||||| || || || || Sbjct 1522540 CG--ATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGAC 1522483 Query 46582 AAAGATTTGCA 46592 ||||| |||| Sbjct 1522482 GAAGATCTGCA 1522472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236711350280