Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq37 138 1e-27 seq25 116 4e-21 seq1 116 4e-21 seq92 111 2e-19 >seq37 Length=418716 Score = 138 bits (152), Expect = 1e-27 Identities = 242/347 (70%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 132716 CGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCAATTAAGT 132774 |||||||||| | ||| || || ||||||||||||||| ||| | || || || | Sbjct 51741 CGACGAGCAGACGGTCAGCAACAAACTCGATGTATTGCTTCATCAGGTTGGC-GTTCATG 51683 Query 132775 CCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTC 132833 || |||||| |||| ||||||||| || || || || |||||| || ||| || || Sbjct 51682 CCGAGCAGAGCGCA-CGGCAGCGCCTCTGTCAGGAACTCTTGCTCAATCTTGACGGCATC 51624 Query 132834 GGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAA 132893 | || || || ||| | || || || || | | || || ||||| || Sbjct 51623 GACGATGACCGCCTCCACGACCTCCTTACTGGGTCGGTTCTTCAGGTGAGAGAACAGCAG 51564 Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| ||| | |||||||| | ||| ||||| |||||| |||||||| Sbjct 51563 GCAGGCAAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTCAG 51504 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||| ||||| || || || || |||||||| || || | |||||| || ||||| Sbjct 51503 GCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGATGCGAAAGCACCACTGAAGAA 51444 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG 133060 || ||||| || || || || || | || ||||| | | || |||| Sbjct 51443 GATACCCTCCACAGCGGCAAAGGCAATCAAGCGCTGGGCAAAGGTGG 51397 Score = 136 bits (150), Expect = 4e-27 Identities = 196/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| || || || || | || ||||| | ||||||||| ||| || || Sbjct 51236 GTAGGTGTCAATAAGAAGAGAGTATGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAA 51177 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||||||||||||| |||||| | ||| || || | |||||||| || || || Sbjct 51176 GCCGTAAAAGCACCGAGCCTCGGGGATCTGAACCTCGCCACTAAAACGCTCCACAAGGTT 51117 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||| || |||||| || |||||||| | ||| ||| |||| Sbjct 51116 CTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATAAAATATTT 51057 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | || || | || | ||||||| || | |||||||| ||||| | |||||| Sbjct 51056 CTCATCCTCATTGATTCGGTTGTTCCAGTCGTGCATATCCTTGGAGAGGTCAATCTCCTC 50997 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || || || || || |||||||| Sbjct 50996 AGCAGTCCAGAAGGAGGCTTCAGCCTTCTTGTACAT 50961 >seq25 Length=549874 Score = 116 bits (128), Expect = 4e-21 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || ||||| || || || |||||| | || || ||| | Sbjct 482672 AAGATGCAGATCTTTGTCAAGACTCTCACCGGTAAGACGATCACCTTGGAGGTGGAGTCT 482613 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCG 38358 |||||| | | |||| ||||| || |||| || || || || ||||| ||| Sbjct 482612 TCCGACACAATCGACAACG--TAAAGTCGAAGATCCAGGATAAGGAAGGCATTCCTCCCG 482555 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| ||||| ||||| || |||| || ||||||| ||| | Sbjct 482554 ACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCAGCGATT 482495 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| | || || ||| | ||||| ||| | | ||||| Sbjct 482494 ACAACATCCAGAAGGAGTCTACCCTCCATCTCGTGCTCCGTCTTCGTGGCGG 482443 Score = 105 bits (116), Expect = 7e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| ||||| | ||||| || || || || |||| || ||| | |||||| || | Sbjct 482366 TCGTCAAAACCTTGACGGGAAAGACGATTACGCTCGAGGTTGAGTCATCCGACA-CGATC 482308 Query 38314 AAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | ||||| || |||| || ||||| || ||||| ||||||| ||||| || Sbjct 482307 GACAACGTAAAGTCGAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCAGCAGCGCCTG 482248 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| || ||||| ||||| || |||| || ||||| | |||||||||||| || ||| Sbjct 482247 ATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACCCTGAGCGACTACAACATTCAGAAG 482188 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| | || || || | ||||| ||| Sbjct 482187 GAATCCACCCTCCACCTTGTGCTCCGT 482161 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || || |||||| | || || || | | Sbjct 481920 ATGCAAATCTTCGTGAAGACATTGACAGGGAAGACGATCACCCTGGAAGTGGAATCGTCA 481861 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || |||| ||||| ||||| || ||| | |||| Sbjct 481860 GATACCATCGACAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACC 481803 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||| | || || || |||||||| || | |||||| || | ||||||| Sbjct 481802 AACAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACTCTGAGTGACTACA 481743 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || || || |||| |||||| | || || ||| | | ||||| Sbjct 481742 ACATTCAGAAAGAGTCGACCCTGCATCTAGTCCTTCGTCTTCGTGGCGG 481694 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || |||||||| || || |||||||| | || || || | | Sbjct 482148 ATGCAAATATTTGTGAAGACGCTCACTGGAAAGACCATCACTCTGGAGGTGGAATCTTCA 482089 Query 38304 GACAGCGT-GCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| ||||||| ||||| ||||| || || | |||| Sbjct 482088 GATACCATCGACAATG--TGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCTCCGGACC 482031 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || ||||| | || || || |||||||| || | || || || | |||||||| Sbjct 482030 AGCAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGACGTACGCTAAGCGACTACA 481971 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | || |||||||| |||| |||| | || || || ||| | || || Sbjct 481970 ATATTCAAAAGGAGTCGACATTGCACCTAGTTCTCCGCTTGCGTGGTGG 481922 >seq1 Length=1779776 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 |||| || ||||| || || ||||||||||| ||||| || |||| |||||| || | | Sbjct 1522472 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACGCTCGAGGTCGAGTCCTCGG 1522531 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 ||| | | | | ||| || |||| ||||| ||||| || || | ||||| | Sbjct 1522532 ACACGATCGACAATGTAAAAAGCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGC 1522591 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 |||| || || | ||| ||||| ||||| || |||| || || ||| ||||||||||| Sbjct 1522592 AGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACACTCTCCGACTACAACA 1522651 Query 38425 TCCAAAAGG 38433 ||||||||| Sbjct 1522652 TCCAAAAGG 1522660 >seq92 Length=114681 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| || || |||||| |||| || ||| | | | Sbjct 39579 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTAGC 39520 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 39519 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 39460 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || || | || ||||| || |||||| Sbjct 39459 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTTTCGGATTACAAC 39400 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| || || || | ||||||||| || | || || Sbjct 39399 ATCCAGAAGGAGAGC-ACCCTCCACCTCGTGCTGCGTCTGCGTGGTGG 39353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171305733760