Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq20 127 2e-24 >seq20 Length=601471 Score = 127 bits (140), Expect = 2e-24 Identities = 208/296 (70%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAG-GTTT-GGTATTCCTATGGGATATGGAGGTCCTC 153804 ||||||||| | |||| | ||| || |||| ||||||||| | || ||||| || |||| Sbjct 25952 GATATTGCTTTTGGTACT--GCACAGCGTTTCGGTATTCCTCTCGGCTATGGCGGACCTC 26009 Query 153805 ATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG 153864 |||| || || || | || || || ||||| | | ||| ||||||||| | || | Sbjct 26010 ATGCGGCCTTTTTCTCCGTTACTGAGAAACATAAGCGTAGGATCCCTGGCAGATTGGTTG 26069 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 | ||| ||| | ||| ||| ||||||||| ||||||| || || | || | Sbjct 26070 GCTTGTCCAAGGATCGAATGGGTCGTAATGCATACAGACTAGCACTGCAAACCCGCGAAC 26129 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984 ||||||| | |||| ||||||||||| || ||||||| | || || || |||| | Sbjct 26130 AGCATATTCGCCGAGAAAAAGCAACCAGCAATGTCTGCACCTCGCAAGCGTTGTTGGCCA 26189 Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCA 154040 ||||| || ||||||| ||| |||||| | || || || | ||||| ||| Sbjct 26190 ATATGAGTGCTCTCTATGCTATATACCATGGTCCTGAAGGCCTCAAGGCTATCGCA 26245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579211069601760