Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq20 125 8e-24 >seq20 Length=601471 Score = 125 bits (138), Expect = 8e-24 Identities = 210/298 (70%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 158422 GACATTGCTGTAGGTAGTATGCAAAG-GTTT-GGTATTCCTATGGGATACGGAGGTCCTC 158479 || |||||| | |||| | ||| || |||| ||||||||| | || || || || |||| Sbjct 25952 GATATTGCTTTTGGTACT--GCACAGCGTTTCGGTATTCCTCTCGGCTATGGCGGACCTC 26009 Query 158480 ATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG 158539 |||| || || || | || || || ||||| | | ||| ||||||||| | || | Sbjct 26010 ATGCGGCCTTTTTCTCCGTTACTGAGAAACATAAGCGTAGGATCCCTGGCAGATTGGTTG 26069 Query 158540 GTCAGTCAGTAGATAGCGAA--GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGA 158597 | ||| ||| |||| ||| ||| ||||||||| ||||||| || || | || Sbjct 26070 GCTTGTCCAAGGAT--CGAATGGGTCGTAATGCATACAGACTAGCACTGCAAACCCGCGA 26127 Query 158598 GCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGC 158657 |||||||| | |||| ||||||||||| || ||||||| | ||||| || |||| Sbjct 26128 ACAGCATATTCGCCGAGAAAAAGCAACCAGCAATGTCTGCACCTCGCAAGCGTTGTTGGC 26187 Query 158658 TAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCA 158715 |||||| || ||||||| ||| |||||| | || || || | ||||| ||| Sbjct 26188 CAATATGAGTGCTCTCTATGCTATATACCATGGTCCTGAAGGCCTCAAGGCTATCGCA 26245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588049443197040