Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq92 109 4e-19 >seq92 Length=114681 Score = 109 bits (120), Expect = 4e-19 Identities = 146/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| || ||||||||| | || |||| || ||||| || ||| Sbjct 39383 GTGCTCTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATCCTCGAGCTGCTTGCCG 39442 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || || |||||||| | || | ||||||||||| ||||| ||| Sbjct 39443 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 39502 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| || | | ||| || |||| ||| || || || |||||||| Sbjct 39503 AC--AT--TGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTACCCGTGAG 39558 Query 34961 AGTCTTCACAAAGATCTGCAT 34981 || || || ||||||||||| Sbjct 39559 GGTTTTGACGAAGATCTGCAT 39579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632654403192