Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13 140 4e-28 >seq13 Length=863668 Score = 140 bits (154), Expect = 4e-28 Identities = 604/946 (64%), Gaps = 28/946 (3%) Strand=Plus/Minus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || ||||||||||| || || ||||| || |||| ||| | ||| | || || Sbjct 288415 AGGGCCATAGATGCTAGGTTGCAAACAGCAACTTCATCTGGGGCTGAATACTCGATGATC 288356 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA---TTNNNNTTG 47993 || | || ||||| | ||| || || ||||| | || || || ||| Sbjct 288355 TCGGTGCAGAGATTGGAGCTGCGGATTGTGCCTAAATTCTTCTGGTTGCTCTTGCGATTG 288296 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 |||| |||||||| ||||| || || | || |||||| |||||| ||| | ||| Sbjct 288295 G--CATGA-TCCTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGTCTGAGCTTCGAGGATG 288239 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAG--CTTTATTATCATGTTCGTA-- 48109 | | ||| | || ||||||||| | || | | | ||| || || Sbjct 288238 GCATACCAGAGCTTCTGAGCCTTTAT--CTTCTGGCGGCCGCGACCCTCAGCCTCATACG 288181 Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169 ||| ||| | | | |||||| ||||| || || |||| | | | || || || ||||| Sbjct 288180 TTTCGTAGAGAGC--CTCAAACTCATCACCGTAGACATCAGCAAGGCCGGGGCACTCATT 288123 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 || ||||||| | ||| || | | |||| || | |||| || | ||| || || Sbjct 288122 CGGGCACATCAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGATCAGGGAT 288063 Query 48230 CCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 |||||| || | || | || | || | | ||| || || ||| |||| || || Sbjct 288062 CCAAAGGGCCAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCCCATGATTCTTTCGCAG 288003 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || || || || | | ||| | ||||||||||| | ||| || || | | || || Sbjct 288002 ATCTAGGAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGATGGCGAAGGCGCCAGG 287943 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || || ||||| |||||||| | || | || || || || | || | | ||| || Sbjct 287942 CCGCTTGTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGACACGCAGCATGGG 287883 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--A 48467 |||||||| || ||| |||| || ||||| | || ||| || | || | || Sbjct 287882 AACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCACGGATGCG 287823 Query 48468 TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGG 48527 | |||| | || || || || ||||| || || || | |||||| || | | Sbjct 287822 GTGAACATTG--AGGCCAATGCCTCCAGCCATCTTTGAAATCATAGCACATGTCTTCAAG 287765 Query 48528 GTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATT 48587 |||||||||||||| || || ||||| || |||| | | || |||||| ||||| Sbjct 287764 GTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAACAAGACGACATC 287705 Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647 || || || ||||| | ||| || | ||| ||||| ||||| | || |||| Sbjct 287704 TGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTGAAGAATTTAAGG 287645 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATC----CCATTGATGTATACCTAT 48703 || | | || || || || | || || || || || |||| || | Sbjct 287644 GACATGAGGTTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCCCCAGATG----CCGAC 287589 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763 | || ||||| | ||| | |||||||| |||||||| ||| || ||||| | ||| Sbjct 287588 CGCCACGCGCATGATCATGTGCTGAGGTCTCTCAACAATCTTGCCGTTGATTTTGAGAAG 287529 Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 || || ||||| || || || |||||||| | ||| ||||| Sbjct 287528 GTAGGACCGCTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGAAA 287483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107120699960