Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq95 141 8e-29 >seq95 Length=111136 Score = 141 bits (156), Expect = 8e-29 Identities = 430/670 (64%), Gaps = 67/670 (10%) Strand=Plus/Plus Query 29764 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGG 29823 || ||||| || | ||||||| ||||||||| |||| |||| || || || || | Sbjct 11741 GTCGGAAACGGCCGCGGCTCCCGCTCGAGCTGTATCTTAAGCGCATCGACATGGTCACAG 11800 Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882 || ||||| || ||||||| | ||| | ||| || || || | ||| | |||||| Sbjct 11801 TACACGTGGGCATCTCCCATGACGTGCGTCAAGCTG-CCGGGGACCAGCTCACAGACGTG 11859 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 || ||||||| || || || | ||||||||||||||| ||||| || ||||| ||||| Sbjct 11860 CGCGATCATGTGAGTAAGTAGCGCGTAGCTGGCGATGTTGAAGGGCACGCCGAGACCCAT 11919 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACA--CGAGA-------------GCTCTCCGTC--- 29984 ||| | |||| ||| || |||||||| ||| ||| ||||| Sbjct 11920 GTCGCAAGACCGCTGATACAGCTGACAGTGCAGATGCCCCTGCCTCCTCTCGCCGTCCTG 11979 Query 29985 GCTC---------------------------------ACGTAAAACTGACACATGGTGTG 30011 || | ||||||||||| | |||| Sbjct 11980 GCACGGTGTCCCGTTCTTCTCCGCGCGCGGGTAAGAGACGTAAAACTGGGCGAACATGTG 12039 Query 30012 GCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCG 30071 |||||| || || ||||| || ||| |||||||| |||| | ||||||||| Sbjct 12040 GCACGGCGGCAGGGCCATCTTCTTCATGTCGGCCGGGTTCCAAGCGCTGAGGATGATGCG 12099 Query 30072 CCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30125 | || | |||||||||| || || | | ||||| ||||| || || Sbjct 12100 GCGATCGTAGGGGTTGTTCCGCAGCTTGTGGATGACTTCGGCG------AGCTGGTCAAC 12153 Query 30126 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30185 ||| | |||| |||||| | || | || ||||||| || || || |||| |||||| Sbjct 12154 GCCCTTGCCCGTGTAGTCGGTCCGCGCATCTATGTACTCGGCGCCAAAGTGCCGCCACTG 12213 Query 30186 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30245 ||| ||||| || || ||||| || || | || | ||| ||||| |||| | Sbjct 12214 GAATCCGTAGACGGGGCCCAGATCACCGACCTCACGATGCGATAAGCCGACGCTGTCTAG 12273 Query 30246 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30305 ||| || | || ||||| ||||||| ||||| ||||| || || | | |||| Sbjct 12274 AAATTCGCGTGATCCGTTACCGTCCCAAATCTTGACCCCGGCTTCCGACAATGCCGTGGA 12333 Query 30306 GTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30364 |||| |||||| | ||||| |||||||| | || ||||| || ||| |||| Sbjct 12334 TGATGTGTTCCCCTCT-ATAAACCATAGCAGCTCGGCGACAACGGCTTTGAGAAATACCC 12392 Query 30365 TCTTGGTCGT 30374 |||| ||||| Sbjct 12393 TCTTCGTCGT 12402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616409773547