Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq37 163 5e-35 >seq37 Length=418716 Score = 163 bits (180), Expect = 5e-35 Identities = 326/489 (67%), Gaps = 5/489 (1%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| |||||||||| | | | | | | || |||| | |||| || | |||||| Sbjct 51366 TGGGCCCTGAAGTGGATTAGCGATCGCAACTCCACCTTTGCCCAGCGCTTGATTGCCTTT 51425 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || ||||||||||| ||||| ||||| ||| | || || | ||||||||||||||| || Sbjct 51426 GCCGCTGTGGAGGGTATCTTCTTCAGTGGTGCTTTCGCATCTATCTTCTGGCTCAAGAAG 51485 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 || ||||| || ||| ||||| ||||||||||||||| | | ||||||||||| Sbjct 51486 CGTGGTCTGATGCCTGGCCTG-ACTTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCT 51544 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 || | || |||||||||||||| | | | ||| || || ||| | | || Sbjct 51545 TCATACCGACTTTGCCTGCCTGCTGTTCTC---TCACCTGAAGAACCGACCCAGTAAGGA 51601 Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | ||| | ||||| || || || |||| ||| | ||||| | Sbjct 51602 GGTCGTGGAGGCGGTCATCGTCGATGCCGTCAAGATTGAGCAAGAGTTCCTGACAGAGGC 51661 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | ||||||||| || || |||| |||||||| |||| ||| Sbjct 51662 GCTGCCGTGCGCTCTGCTCGGCATGAACGCCAACCTGATGAAGCAATACATCGAGTTTGT 51721 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTT 26252 || |||| |||||| | ||||| | | ||||| | | | |||||||| Sbjct 51722 TGCTGACCGTCTGCTCGTCGCTCTGGGTAATGAGAAGGTCTACCGCTCTTCCAACCCGTT 51781 Query 26253 CGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGG 26312 |||||| ||||| ||||| ||| | | || ||||||||||||||||| ||| | ||||| Sbjct 51782 CGACTTCATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGCGTCGG 51841 Query 26313 CGACTATCA 26321 || || || Sbjct 51842 TGATTACCA 51850 Score = 109 bits (120), Expect = 1e-18 Identities = 185/265 (70%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 25471 AAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATT 25530 ||| | || ||| | ||||||||||||||| || ||| |||||| || || |||||| Sbjct 50946 AAATAGATCTGGCAAATGTACAAGAAGGCTGAAGCCTCCTTCTGGACTGCTGAGGAGATT 51005 Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCA---AAGACGAGCAGCATTTT 25587 || || ||||||| ||| ||| |||| || | | || | || ||| | ||||| Sbjct 51006 GACCTCTCCAAGGATATGCACGACTGGAACAACCGAATCAATGAGGATGAGAAATATTTT 51065 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATC-TGTG 25646 || || | |||| |||||||| ||||||||||| || || |||||||| | |||| Sbjct 51066 ATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTTGTG 51125 Query 25647 CGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 ||| | || | | || || ||| | ||||| ||| || ||||| |||||||| Sbjct 51126 -GAGCGTTTTAGTGGCGAGGTTCAGATCCCCGAGGCTCGGTGCTTTTACGGCTTCCAGAT 51184 Query 25707 GGCCATCGAAAATGTGCACTCTGAG 25731 || || || | ||||||||| Sbjct 51185 CATGATGGAGAACATTCACTCTGAG 51209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842025076160