Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 3e-12 >seq2 Length=1500191 Score = 89.7 bits (98), Expect = 3e-12 Identities = 434/683 (64%), Gaps = 17/683 (2%) Strand=Plus/Minus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 |||||||| | || ||||| || ||||| ||||| |||| ||||| || | || || Sbjct 1248302 GACGTCTTCGCACCGCTTGCGAGCGTGCCAAGCGTACTCTGTCTTCGTCTGCCCAGACCT 1248243 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | | || | || || || | ||| || || |||| | || ||||| | || Sbjct 1248242 CCATCGAGATCGACTCACTCTATGAGGGTATCGATTTCTACACATCCATTACTCGAGCCC 1248183 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 ||| || || | || |||||||| || || ||| | |||||||| | ||| Sbjct 1248182 GATTCGAGGAGCTCTGCCAGGATCTCTTCCGATCTACGATTCAGCCCGTTGACCGCGTTT 1248123 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | ||| | || | ||||| || | ||||| || ||||| || || || ||||| | Sbjct 1248122 TGGCTGATGCCAAGATCGACAAGTCCCTGGTCCACGAGATTGTCCTCGTTGGCGGTTCTA 1248063 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTT 475779 | | || || | |||| ||| ||| | || || || || || || Sbjct 1248062 CCCGTATCCCCCGTGTCC-AGAA--GCT--CATTACCGATTACTTCAACGGCAAGGAGCC 1248008 Query 475780 AAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCT 475837 || |||| | || || ||||| |||||||| ||||| ||||| ||||| || ||| Sbjct 1248007 CAAC--AAGTCCATCAACCCCGATGAGGCTGTTGCCTATGGTGCTGCCGTCCAGGCTGCT 1247950 Query 475838 ATTTTATCAGGTCAATCAGACGAGAAA-CTA--AATAATATTGTACTTGTTGACGTAACT 475894 || | || ||| | | | || ||| || | ||| | ||| | ||||| || Sbjct 1247949 ATCCTGTCTGGTGACACTAGCTCCAAGTCTACCAACGAGATTCTGCTTCTCGACGTGGCT 1247890 Query 475895 CCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT 475954 | ||||| | ||| |||| || | || || || ||||| || || ||| | | || Sbjct 1247889 GCCCTTTCTCTCGGTATTGAGACTGCCGGTGGCATGATGACCAAGCTCATTCCCCGCAAC 1247830 Query 475955 ACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014 ||| | ||||| ||| || || | || || || || | || || || || | | Sbjct 1247829 ACTACCATCCCCACCAAGAAGTCCGAGGTCTTCTCTACCTTCTCCGACAACCAGCCTGGT 1247770 Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGA 476074 || ||||| ||| || ||||| | || ||| || || || ||| || || Sbjct 1247769 GTCCTTATCCAGGTCTACGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTGCTCGGC 1247710 Query 476075 ACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134 | || | ||| || || |||||||| || | || ||||||||||| || |||||| Sbjct 1247709 AAGTTCGAACTTACCGGCATCCCTCCTGCCCCTCGTGGTGTTCCTCAAATCGAGGTTACT 1247650 Query 476135 TTTGATATTGATGCAAATGGTAT 476157 || ||| | || || || || || Sbjct 1247649 TTCGATCTCGACGCCAACGGAAT 1247627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268168948130372