Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq13 114 7e-21 >seq13 Length=863668 Score = 114 bits (126), Expect = 7e-21 Identities = 253/374 (68%), Gaps = 4/374 (1%) Strand=Plus/Minus Query 25984 TTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGG 26043 ||| || || || ||||||||| ||||||| ||| ||||| | ||| ||||||||||| Sbjct 288029 TTCCTCCTTCCCATGATTCTTTCGCAGATCTAGGAACTCAAACACATCCGAGTGCCATGG 287970 Query 26044 TTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGC 26103 ||| | |||||| || || || | || ||||||||||| ||||| | || Sbjct 287969 TTCAAGATAGATGGCGAAGGCGCCAGGCCGCTTGTTACCACCTTGATCGACGTAACGAGC 287910 Query 26104 AGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTT-GAAAATCCGTTTGTGCTAT 26162 || | |||||| || || ||| ||||| ||| | ||| || ||||| || | | Sbjct 287909 CGTGTTATTGAAGACACGCAGCATGGGAAC-AATACCGTTAGATGTACCGTTAGTTCCAG 287851 Query 26163 GAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATT 26222 || | || || || | | || |||| ||| | || || || |||||| | Sbjct 287850 CGATGTAAGAGCCCGTGGCACGGATGCGGTGAACATTGAGGCCAATGCCTCCAGCCATCT 287791 Query 26223 TTGAAATAGCTGCACA-ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTC 26281 ||||||| ||||| ||| || ||||| ||||||| | |||||||| | ||| Sbjct 287790 TTGAAATCATAGCACATGTCTTCAA-GGTATCATAAATTCCCTCGATGCTATCGTCCTTC 287732 Query 26282 ATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTC 26341 || | | ||| |||||||| || | || | || | |||||| | ||| || | |||| Sbjct 287731 ATGTCGACTAAGAAACAAGACGACATCTGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTC 287672 Query 26342 GGTGTAGCATGAGT 26355 || | |||||| || Sbjct 287671 GGAGAAGCATGGGT 287658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039262941925