Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq20 125 8e-24 >seq20 Length=601471 Score = 125 bits (138), Expect = 8e-24 Identities = 210/298 (70%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 139247 TGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGC 139306 ||| ||||| | || || || | |||||| ||| ||||||| || |||||| || Sbjct 26245 TGCGATAGCCTTGAGGCCTTCAGGACCATGGTATATAGCATAGAGAGCACTCATATTGGC 26186 Query 139307 GAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTC 139366 | || ||||| | ||||||| || ||||||||||| |||| | ||||||||| || Sbjct 26185 CAACAACGCTTGCGAGGTGCAGACATTGCTGGTTGCTTTTTCTCGGCGAATATGCTGTTC 26126 Query 139367 TCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC--TTCGCTGTCCACTGACTGACCT 139424 | ||||| ||||||| |||||||||| | || |||| ||| ||| || Sbjct 26125 GCGGGTTTGCAGTGCTAGTCTGTATGCATTACGACCCATTCG--ATCCTTGGACAAGCCA 26068 Query 139425 ACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGA 139484 || | ||||||||| ||| | | ||||| || || || | || || || |||||| Sbjct 26067 ACCAATCTGCCAGGGATCCTACGCTTATGTTTCTCAGTAACGGAGAAAAAGGCCGCATGA 26008 Query 139485 GGACCTCCGTATCCCATAGGAATACC-AAAC-CTTTGCATACTACCTACAGCAATATC 139540 || || || || || | ||||||||| |||| || ||| | |||| | ||||||||| Sbjct 26007 GGTCCGCCATAGCCGAGAGGAATACCGAAACGCTGTGC--AGTACCAAAAGCAATATC 25952 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGAT-GCGTTTGCTATTGGTAATC 139917 ||| ||||| || || |||||| | || || | | || | ||||| || || || | Sbjct 25603 CATGGCCTCCGCAGCGGCAGTTCCCTCGTCGAGCA-AGCTAGCGTTGGCAATGGGGAGCG 25545 Query 139918 CTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATA 139977 | ||||| || |||| | |||||| |||||| || | ||||| | ||| || | Sbjct 25544 CAGTAAGATCGGTGACCATGGTTTGGAAATTGACCAAGGACTCCAACCGTCCTTGGCTGA 25485 Query 139978 TCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCT 140037 |||| | || |||||||||||| |||||||| ||||| || || ||||| |||| Sbjct 25484 TCTCGGGCTGGTAGGGAGTGTAACTCGTGTACCAGGCCGGATTTTCCAGCACGTTCCGCT 25425 Query 140038 GTATGACTGGGGGTGTAATGGTTCCATAGTATCC 140071 | || || | || ||| || |||||||| || Sbjct 25424 GGATAACCGCAGGCGTATGGGACCCATAGTAGCC 25391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578996670242280