Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq37 156 5e-32 seq59 143 3e-28 seq36 116 5e-20 >seq37 Length=418716 Score = 156 bits (172), Expect = 5e-32 Identities = 182/244 (75%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || |||||| ||| || |||||||||||||| |||||||||| Sbjct 51857 CGCCTTCTGGTAATCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGCGAGAT 51798 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGAC 868807 |||||| | ||||||||||| | |||| ||| || || ||||||| Sbjct 51797 GTTCTCCATGAAGTCGAACGGGTTGGAAGAGCGGTAGACCTTCTCATTACCCAGAGCGAC 51738 Query 868808 GCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCG 868867 | ||||| ||||| || |||||||||||||| || ||| ||| ||||||||||||| Sbjct 51737 G--AGCAGACGGTCAGCAACAAACTCGATGTATTGCTTCATCAGGTTGGCGTTCATGCCG 51680 Query 868868 ATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG 868927 | || || |||||||| ||| ||| ||||||| ||| |||| |||||| |||||| Sbjct 51679 AGCAGAGCGCACGGCAGCGCCTCTGTCAGGAACTCTTGCTCAATCTTGACGGCATCGACG 51620 Query 868928 ATGA 868931 |||| Sbjct 51619 ATGA 51616 Score = 98.7 bits (108), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209 ||||| | ||||||| || |||| ||| ||||| || ||| | |||||| Sbjct 51567 GCAGGCA-GGCAAAGTCGG---TATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAG 51512 Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 || | ||||| ||||| || || |||||||||||||| ||||| | |||| || Sbjct 51511 AAAGTCAGGCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGATGCGAAAGCACCA 51452 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||| ||||| ||||| || ||||||||| | || | |||| |||||||||| | | Sbjct 51451 CTGAAGAAGATACCCTCCACAGCGGCAAAGGCAATCAAGCGCTGGGCAAAGGTGGAGTTG 51392 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 | || | | |||||||||| |||||||| ||||| || Sbjct 51391 CGATC---GCTAATCCACTTCAGGGCCCAGTCAGCCTTCTT 51354 >seq59 Length=226629 Score = 143 bits (158), Expect = 3e-28 Identities = 184/249 (74%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCC 1574062 ||| |||||||||||||||| | |||||| | ||| |||| | | ||| ||||| Sbjct 159906 GGCATCGACGTCGTGCGCAACAGGATCAAGGGCTTCGCGCAGAAGAAGGT-GACGCTGCC 159848 Query 1574063 GCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCA 1574122 ||| || || |||||| || | |||||||||||||||||| || | ||||||| || || Sbjct 159847 GCCGGGCCGGCACAAGCTGGTGATCCTCGACGAGGCCGACAGCATGACGTCGGGCGCGCA 159788 Query 1574123 GCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTG 1574182 |||||| |||||| || ||||| | || | |||||||||||||| || | ||||| Sbjct 159787 GCAGGCGCTGCGGCGGACGATGGAGATCTACTCGAACACGACGCGCTTCGCGTTCGCGTG 159728 Query 1574183 CAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTT 1574240 ||| |||| | | |||||||| | || | |||||| ||||| || ||||| | Sbjct 159727 TAACCAGTCGAACAAGATCATCGAGCCGCTGC--AGTCGCGGTGCGCGATCCTGCGGTAC 159670 Query 1574241 GTGCGCCTG 1574249 | ||| ||| Sbjct 159669 GGGCGGCTG 159661 >seq36 Length=418949 Score = 116 bits (128), Expect = 5e-20 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| || || || |||||||| || ||| |||| |||||| | || || || Sbjct 342571 GCCTCCAACTATCTAGATATTAAGCCTCTCCTTGATGTTGGCTGCAAGACCGTCGCGAAT 342512 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| |||||||||||||| ||||| || ||||||| Sbjct 342511 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGGAAGACATTCAACATCA 342463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107119586540763