Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq37 145 1e-28 seq59 138 2e-26 seq36 107 3e-17 seq13 102 1e-15 seq41 100 5e-15 >seq37 Length=418716 Score = 145 bits (160), Expect = 1e-28 Identities = 186/250 (74%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || |||||||| || || || |||||| ||| || |||||||||||||| ||||| Sbjct 51862 ACACCCGCCTTCTGGTAATCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGC 51803 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC-ACCC-GA 794010 ||||| |||||| | ||||||||||| | ||||| |||||| |||| || Sbjct 51802 GAGATGTTCTCCATGAAGTCGAACGGGTTGGAAGAGCGGTAGACCTTCTCATTACCCAGA 51743 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 |||||| ||||| ||||| || || || || ||||| || ||| ||| |||||||| Sbjct 51742 GCGACG--AGCAGACGGTCAGCAACAAACTCGATGTATTGCTTCATCAGGTTGGCGTTCA 51685 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||| || || ||| ||||||| ||| | | ||||||| ||| |||| |||||| Sbjct 51684 TGCCGAGCAGAGCGCAC-GGCAGCGCCTCTGTCAGGAACTCTTGCTCAATCTTGACGGCA 51626 Query 794130 TCGATGATGA 794139 |||| ||||| Sbjct 51625 TCGACGATGA 51616 >seq59 Length=226629 Score = 138 bits (152), Expect = 2e-26 Identities = 211/297 (71%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAATC-GAC-CT 2019196 ||| | ||||||||||| | | |||||| | || ||| | ||||| ||| || Sbjct 159906 GGCATCGACGTCGTGCGCAACAGGATCAAGGGCTTCGCGC----AGAAGAAGGTGACGCT 159851 Query 2019197 GCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGC 2019256 |||||| ||||| |||||| || | |||||||| ||||||||| || | ||||||| || Sbjct 159850 GCCGCCGGGCCGGCACAAGCTGGTGATCCTCGACGAGGCCGACAGCATGACGTCGGGCGC 159791 Query 2019257 CCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGC 2019316 |||||||| || || ||| ||||| | ||| | ||||||||||| || ||| | || Sbjct 159790 GCAGCAGGCGCTGCGGCGGACGATGGAGATCTACTCGAACACGACGCGCTTCGCGTTCGC 159731 Query 2019317 CTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376 || ||| |||| | | ||||||| | || ||| || ||||| ||| |||| | Sbjct 159730 GTGTAACCAGTCGAACAAGATCATCGAGCCGCTGCAGTCGCGGTGCGCGATCCTGCGGTA 159671 Query 2019377 TGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 | ||| || || || || ||| | | | ||| |||| |||| ||||| ||||| Sbjct 159670 CGGGCGGCTGACGGAGGCGCAGGTGGTCAAGCGGCTGCTGCAGATCATCGAGGCCGA 159614 >seq36 Length=418949 Score = 107 bits (118), Expect = 3e-17 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| || || || ||||| ||||| ||| | || ||||||||||| || || Sbjct 342571 GCCTCCAACTATCTAGATATTAAGCCTCTCCTTGATGTTGGCTGCAAGACCGTCGCGAAT 342512 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| ||||| ||||| || ||||||| Sbjct 342511 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGGAAGACATTCAACATCA 342463 >seq13 Length=863668 Score = 102 bits (112), Expect = 1e-15 Identities = 255/389 (66%), Gaps = 15/389 (4%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || ||||| || || ||||||| || ||||| || |||||||| |||| ||||| || Sbjct 287926 TGATCGACGTAACGAGCCGTGTTATTGAAGACACGCAGCATGGGAACAATACCGTTAGAT 287867 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||||| || || || | ||| | ||||| ||| || | ||| | | ||| Sbjct 287866 GTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCACGGATGCGGTGAACATTGAGGCCA 287807 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| || ||| ||| || || | || || | |||| || || || || |||||| Sbjct 287806 ATGCCTCCAGCCATCTTTGAAATCATAGCACATGTCTTCAAGGTATCATAAATTCCCTCG 287747 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||| |||||||||| | | || || ||||| | || || ||| || ||| Sbjct 287746 ATGCTATCGTCCTTCATGTCGACTAAGAAACAAGACGACATCTGGGGTTGCGGTGTTCCG 287687 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTG 2073840 ||||||||||| || || | || ||| | | | |||||||| | |||||| Sbjct 287686 GCATTGAAGAGTGTCGGAGAAGCATGGGTGAAGAATTTAAGGGACATGAGGTTGTAGGTC 287627 Query 2073841 GCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGACG 2073900 |||| || | | | || |||| | || || ||||| || ||| Sbjct 287626 TCGAGGACCCTC------------TCGATGTCGTC---TCCCCAGATGCCGACCGCCACG 287582 Query 2073901 CGCATGATCATGTACTGGGGTCGCTCGAC 2073929 ||||||||||||| ||| |||| ||| || Sbjct 287581 CGCATGATCATGTGCTGAGGTCTCTCAAC 287553 >seq41 Length=403229 Score = 100 bits (110), Expect = 5e-15 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||||||||||||||| || ||||| || ||| |||| ||||||||| | | Sbjct 380405 GTACTTGGTGACGGCCTTGGTACCTTCGGAGACAGCATGCTTGGCAAGTTCGCCGGGGAG 380464 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||| ||||| |||| ||||||||| || || Sbjct 380465 GATGAGGCGGACGGAGGTCTGGATTTCACG 380494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916220976479921