Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq92 138 7e-28 seq1 104 2e-17 seq25 86.0 4e-12 >seq92 Length=114681 Score = 138 bits (152), Expect = 7e-28 Identities = 164/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | ||||||||||||||| ||||| || ||||| ||| | || |||| Sbjct 39367 CAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATC 39426 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 39427 CTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 39486 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | | ||| || || | ||| | Sbjct 39487 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGA 39542 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| ||||||||||| || || |||||||||||||| Sbjct 39543 TAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATGAT 39582 >seq1 Length=1779776 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| ||||| || || | || | || || || ||||| || ||||||| Sbjct 1522660 CCTTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 1522601 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 | || || |||||||| | || | ||||||||||| | || || ||| || Sbjct 1522600 TAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGT 1522541 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| || | || |||||||| |||||||||||||| || | Sbjct 1522540 CGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGA 1522481 Query 34968 AGATCTGCATGATAG 34982 ||||||||| |||| Sbjct 1522480 AGATCTGCACTATAG 1522466 >seq25 Length=549874 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || || ||| | || | || || || ||||| |||||||| Sbjct 482478 CTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 482537 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || |||||||| | || | || ||||| || | || || || ||| Sbjct 482538 GATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTCGACTTTACGTT 482597 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || || | ||| || ||||| || ||||| ||||| || Sbjct 482598 GTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGTCTTACCGGTGAGAGTCTTGAC 482657 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 482658 AAAGATCTGCAT 482669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691851317941