Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-12 seq18 86.0 5e-11 >seq2 Length=1500191 Score = 89.7 bits (98), Expect = 4e-12 Identities = 278/428 (65%), Gaps = 3/428 (1%) Strand=Plus/Plus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 ||||| || ||||| || ||||| ||| || || ||| |||| | || || | Sbjct 1247567 TTAGTGATGGTAATCTTGTTGGACTTGCCAGTACCCTTCTCAACGGCGGAGACGTTCATG 1247626 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || ||||| || | ||| || || || || |||||||| || || | | ||||| Sbjct 1247627 ATTCCGTTGGCGTCGAGATCGAAAGTAACCTCGATTTGAGGAACACCACGAGGGGCAGGA 1247686 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | || || || || || || ||| || || ||| Sbjct 1247687 GGGATGCCGGTAAGTTCGAACTTGCCGAGCAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 1247746 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | |||||| || ||| || || || || | || | || || | Sbjct 1247747 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 1247806 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || ||||| | ||| | |||||||| || ||||| || Sbjct 1247807 GACTTCTTGGTGGGGATGGTAGTGTTGCGGGGAATGAGCTTGGTCATCATGCCACCGGCA 1247866 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| |||||||| | || || || | || | ||| | || | || || Sbjct 1247867 GTCTCAATACCGAGAGAAAGGGCAGCCACGTCGAGAAGCAGAATCTCGTTGGTAGACTTG 1247926 Query 281739 CATC-AGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | ||| | |||| || ||||| || || | ||||||||||| |||||||| ||| Sbjct 1247927 GAGCTAGTGTCACCAGACAGGATAGCAGCCTGGACGGCAGCACCATAGGCAACAGCCTCA 1247986 Query 281798 TCAGGATT 281805 || || || Sbjct 1247987 TCGGGGTT 1247994 >seq18 Length=623415 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| || || || || || ||||| ||||| || || || || | | | | |||||| Sbjct 474359 TTTCTCCAGGCCGTAAGCCAAAGCTGCAGCTGTCGGCTCGTTGACCACGCGGAGAACATT 474300 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||||||||||| ||| ||||| || |||||||| | || || |||||||| ||||| Sbjct 474299 GAGACCAGCAATCTGTCCGGCATCCTTGGTGGCTTGACGCTGCGAGTCGTTAAAGTATGC 474240 Query 282454 AGGAACAGTAATAACGGCAT 282473 || ||||| | ||| |||| Sbjct 474239 TGGGACAGTGACAACAGCAT 474220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740618666110014