Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25 129 1e-24 >seq25 Length=549874 Score = 129 bits (142), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| || ||||||| ||||| || || || || || ||||| || || Sbjct 481920 TACCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGC 481979 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || || || || || || ||||||||||| || | ||| || || |||| Sbjct 481980 TTAGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAG 482039 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || || || |||||| || ||||| || || ||||| || ||| Sbjct 482040 GGATACCCTCCTTGTCCTGGAT-TTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCC 482098 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| ||| || ||||| || || | |||||| |||||||| ||||| Sbjct 482099 ACCTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCAT 482148 Score = 127 bits (140), Expect = 4e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||| ||||| || || |||||||| || || || ||| ||| | | || Sbjct 481705 ACGAAGGACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCC 481764 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || ||||||||||| || | |||||| || || || || || ||||| Sbjct 481765 ATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTT 481824 Query 82715 ATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || || ||| ||||| || ||||| || || ||||| | ||| ||||||| || | Sbjct 481825 GTCCTGGATC-TTGCTCTTCACATTGTCGATGGTATCTGACGATTCCACTTCCAGGGTGA 481883 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| |||||||| ||||| || || || ||||| Sbjct 481884 TCGTCTTCCCTGTCAATGTCTTCACGAAGATTTGCAT 481920 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || ||||| || ||||| || || ||||| Sbjct 482441 TACCGCCACGAAGACGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGC 482500 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || ||| ||||| || || || || || || ||||| || | || || || |||| Sbjct 482501 TGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAG 482560 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| | ||||| || || || || || || || | Sbjct 482561 GAATGCCTTCCTTATCCTGGATCTTCGACTTTACGTTGTCGATTGTGTCGGAAGACTCCA 482620 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || |||||||| || || | ||||| ||||| |||||||| Sbjct 482621 CCTCCAAGGTGATCGTCTTACCGGTGAGAGTCTTGACAAAGATCTGCAT 482669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824193461021