Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq13 127 5e-24 >seq13 Length=863668 Score = 127 bits (140), Expect = 5e-24 Identities = 349/529 (66%), Gaps = 7/529 (1%) Strand=Plus/Plus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 |||||| |||| || || || || || ||||| | || || | ||||| ||| Sbjct 287661 CATGCTTCTCCGACACTCTTCAATGCCGGAACACCGCAACCCCAGATGTCGTCTTG-TTT 287719 Query 110529 CTTCTAGGA-ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TG 110586 ||| || || || || ||| || || || ||||||||| | ||| |||| | || Sbjct 287720 CTTAGTCGACATGAAGGACGATAGCATCGAGGGAATTTATGATAC-CTTGAAGACATGTG 287778 Query 110587 CTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAG 110646 || | ||||| || | ||||||| ||||| | | ||||| || || | | | Sbjct 287779 CTATGATTTCAAAGATGGCTGGAGGCATTGGCCTCAATGTTCACCGCATCCGTGCCACGG 287838 Query 110647 GAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCT 110706 | | | ||||| | | || ||| | || | || ||||||| ||| | | |||| Sbjct 287839 GCTCTTACATCGCTGGAACTAACGGTACATCTAACGGTATTGTTCCCATGCTGCGTGTCT 287898 Query 110707 TCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTA 110763 |||| |||| || || || ||||||||||| ||| | |||| | || || | Sbjct 287899 TCAATAACACGGCTCGTTACGTCGATCAAGGTGGTAACAAGCGGCCTGGCGCCTTCGCCA 287958 Query 110764 TCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAG 110823 ||||||| ||||| ||||| || ||| | ||||| ||| |||| || || || ||||| | Sbjct 287959 TCTATCTTGAACCATGGCACTCGGATGTGTTTGAGTTCCTAGATCTGCGAAAGAATCATG 288018 Query 110824 GATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCA 110883 | || ||| | || ||||| | || | || | ||||| | ||| | |||| Sbjct 288019 GGAAGGAGGAAGTTCGCGCTCGTGACCTCTTCTTGGCCCTTTGGATCCCTGATCTCTTCA 288078 Query 110884 TGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTC 110943 |||| ||||| || | || ||| |||| | || ||||| || || | || || | Sbjct 288079 TGAAGCGTGTCGAAAAGAACGGCGAGTGGACGCTGATGTGCCCGAATGAGTGCCCCGGCC 288138 Query 110944 TATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGA 110992 | ||||||| || || | |||||||| | || ||||||| ||||| Sbjct 288139 TTGCTGATGTCTACGGTGATGAGTTTGAGGCTCTCTACGAAACGTATGA 288187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186809165756679