Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 seq25 89.7 5e-13 >seq13 Length=863668 Score = 127 bits (140), Expect = 2e-24 Identities = 623/970 (64%), Gaps = 35/970 (4%) Strand=Plus/Minus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTG--TACTGCACG 147513 || ||| ||||| || || ||||| || || || || | | |||| |||| | | Sbjct 288416 CAGGGCCATAGATGCTAGGTTGCAAACAGCAACTTCATCTGGG--GCTGAATACTCGATG 288359 Query 147514 ATTTCGGCGCACAGGTTG---CTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTC 147570 || |||| ||| || ||| |||| || || || ||||| | ||| ||||| || Sbjct 288358 ATCTCGGTGCAGAGATTGGAGCTGCGGATTGTGCCT---AAATTCTTCTGGTTGCTCTTG 288302 Query 147571 CGATTG-CACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAAC 147629 |||||| || | || ||| |||||||| | || |||||| || || | ||| | Sbjct 288301 CGATTGGCATGA-TCCTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGTCTGAGCTTCGAG 288243 Query 147630 GAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTC 147686 ||| | ||| || | ||| || | | ||| || ||| ||||| || Sbjct 288242 GATGGCATACCAGAGC---TTCTGAGCCTTTATCTTCTGGCGGCCGCGACCCTCAGCCTC 288186 Query 147687 GTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTG 147746 ||| ||||| | ||||||||| || |||||| ||| ||||||||||| |||| Sbjct 288185 ATACGTTTCGTAGAGAGCCTCAAACTCATCACCGTAGACATCAGCAAGGCCGGGGCACTC 288126 Query 147747 ATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGG 147806 || ||| |||||||||| |||| | ||| | | || || ||| || ||||| || Sbjct 288125 ATTCGGGCACATCAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGATCAGG 288066 Query 147807 CACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCG--CCCATGTTGCGT 147864 | ||| || || | | || || || || || | | || | |||||| | | | Sbjct 288065 GATCCAAAGGGCCAAGAAGAGGTCACGAGC---GCGAACTTCCTCCTTCCCATGATTCTT 288009 Query 147865 TT-CAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCG 147922 | || || || | || | | | | || | |||||| ||||||| |||| ||| | | Sbjct 288008 TCGCAGATCTAGGAACTCAA-ACACATCCGAGTGCCATGGTTCAAGATAGATGGCGAAGG 287950 Query 147923 CACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCA 147979 | || ||||| || || || ||||| | || || |||| || || || |||| Sbjct 287949 CGCCAGGCCGCTTGTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGACACGCA 287890 Query 147980 CCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTC 148039 |||||| | | ||| | | || ||||| || | ||| | ||| ||| | Sbjct 287889 GCATGGGAACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCAC 287830 Query 148040 GCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCG 148098 | | ||| || || | ||||||||| || ||| | |||||| || ||| || Sbjct 287829 GGATGCGGTGAACATTGAGGCCAATGCCTCCAGCCAT-CTTTGAAATCATAGCACATGTC 287771 Query 148099 CCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAA 148158 ||| || || || || |||||||| |||| || | | | | || ||||| || Sbjct 287770 TTCAAGGTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAACAAGAC 287711 Query 148159 CACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAAT 148218 |||| || || | | ||||| || ||| || || ||| || || || || ||| Sbjct 287710 GACATCTGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTGAAGAAT 287651 Query 148219 TTTTGACTCATCATGCGATACGTCTCAAT-AGCGTCTTCGATGTCGTCGCCGTGAATGCC 148277 || | ||| | | || ||||| | | | ||| |||||||||| || ||||| Sbjct 287650 TTAAGGGACATGAGGTTGTAGGTCTCGAGGACCCTCT-CGATGTCGTCTCCCCAGATGCC 287592 Query 148278 CAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA-CTTGATTGTTGATCTTGA 148336 | ||| |||||||||| ||||||||| |||| || ||| |||| |||||| |||| Sbjct 287591 GACCGCCACGCGCATGATCATGTGCTGAGGTCTCTCAACAATCTTG-CCGTTGATTTTGA 287533 Query 148337 GAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGT 148396 |||| || || | || ||| | ||||| || | ||| | ||||| | |||| Sbjct 287532 GAAGGTAGGACCGCTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGAAATCGCGGTCGT 287473 Query 148397 AAGCGATGGC 148406 | | ||||| Sbjct 287472 ATACAATGGC 287463 >seq25 Length=549874 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||||||||| |||| || ||| ||| || ||||| ||||| | | Sbjct 481727 GACTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCCTCCAGCTGCTTACCAGCA 481786 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| || || || || || || || || || || |||| Sbjct 481787 AAGATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACA 481846 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | || |||||||| | || | ||| || || |||| || || Sbjct 481847 TTGTCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGTCTTCCCTGTCAATGTCTTC 481906 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 481907 ACGAAGATTTGCAT 481920 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || ||||||||||||||||||| ||| || || |||||||| || || | | Sbjct 482183 GATTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCA 482242 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || ||||| || || ||||| |||||||||||||| || || || | Sbjct 482243 AAAATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTCGACTTTACG 482302 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | || |||| | ||| || |||| ||| | ||| || || |||| ||||| Sbjct 482303 TTGTCGATCGTGTCGGATGACTCAACCTCGAGCGTAATCGTCTTTCCCGTCAAGGTTTT 482361 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||||||| | ||| | || | | ||||| |||||||| ||||||||||| | || Sbjct 481927 ACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTTAGCGT 481986 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| ||||| | | |||| ||||| || || || ||||| || || Sbjct 481987 ACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATACC 482046 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| |||| | || | ||||| | | ||||| || | Sbjct 482047 CTCCTTGTCCTGGATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCACCTCCAG 482106 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||| || || || | || || |||||| Sbjct 482107 AGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCATG 482149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609776124040