Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq37 140 5e-27 seq59 107 3e-17 >seq37 Length=418716 Score = 140 bits (154), Expect = 5e-27 Identities = 189/258 (73%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 1456524 TCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGC 1456583 |||||||||| |||||| |||| ||| ||||||| | | ||| |||||||| || | Sbjct 51616 TCATCGTCGATGCCGTCAAGATTGAGCAAGAGTTCCTGACAGAGGCGCTGCCGTGCGCTC 51675 Query 1456584 TCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCT 1456643 | ||||||||||||||| | || ||| || ||||| | | ||||| || ||||| || Sbjct 51676 TGCTCGGCATGAACGCCAAC-CTGATGAAGCAATACATCG-AGTTTGTTGCTGACCGTCT 51733 Query 1456644 GCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGG 1456703 ||||| || || || | |||||| |||||| | ||||||||||| | |||| Sbjct 51734 GCTCGTCGCTCT-GGGTAATGAGAAGGTCTACCGCTCTTCCAACCCGTTCGACTTCATGG 51792 Query 1456704 AGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCA 1456762 || |||||||||| |||||||||||||| || ||| ||||| || || ||| | Sbjct 51793 AGAACATCTCGCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGATTACCAGA 51852 Query 1456763 AGGCCGGCGTCACCGCCA 1456780 |||| || || | |||| Sbjct 51853 AGGCGGGTGTGATGGCCA 51870 >seq59 Length=226629 Score = 107 bits (118), Expect = 3e-17 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 || || || || || ||| | | |||||||| || || || |||||| | ||||||| Sbjct 159650 TGCGCCTCCGTCAGCCGCCCGTACCGCAGGATCGCGCACCGCGACTGCAGCGGCTCGATG 159709 Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971 | | | |||| ||| || || | || || |||||||| || | | | ||||| Sbjct 159710 ATCTTGTTCGACTGGTTACACGCGAACGCGAAGCGCGTCGTGTTCGAGTAGATCTCCATC 159769 Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATG 333031 ||| ||| || ||||| || || ||| ||| | || |||||||||||||||||| | Sbjct 159770 GTCCGCCGCAGCGCCTGCTGCGCGCCCGACGTCATGCTGTCGGCCTCGTCGAGGATCACC 159829 Query 333032 ATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTG 333091 | |||||| || || ||||||| ||| | ||| ||| | ||||| | ||| Sbjct 159830 AGCTTGTGCCGGCCCGGCGGCAGCGTCACCTTCTTCTGCGCGAAGCCCTTGATCCTGTTG 159889 Query 333092 CGCACGACGTCCACGCC 333108 ||||||||||| | ||| Sbjct 159890 CGCACGACGTCGATGCC 159906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177788148010718