Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq25 150 2e-31 seq1 98.7 1e-15 >seq25 Length=549874 Score = 150 bits (166), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || ||||||||||| |||||||||||||||| | ||| | Sbjct 482159 AGACGGAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGG 482218 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 482219 CCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCT 482278 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || ||| | |||||||| || || || ||||| ||| Sbjct 482279 TTATCCTGGATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACTCAACCTCGAGCGTA 482338 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || || || || || || ||||| |||| Sbjct 482339 ATCGTCTTTCCCGTCAAGGTTTTGACGA 482366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| | || || ||||||||||| |||||||||| | || | || || Sbjct 481940 ACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTTAGCGTACGTCCATCCTCC 481999 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | ||| ||||| || || || || || || || || || Sbjct 482000 AGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGG 482059 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| || || ||| | || || || |||||||| || ||||| ||||| || Sbjct 482060 ATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCACCTCCAGAGTGATGGTCTTT 482119 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || || || |||||||| Sbjct 482120 CCAGTGAGCGTCTTCACAAATATTTGCAT 482148 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || || || || |||||||||||||| | | ||| | || || Sbjct 481712 ACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCCTCC 481771 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | ||| || || || || || || || || || || || Sbjct 481772 AGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGG 481831 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | || || ||||||||||| || || || || || || Sbjct 481832 ATCTTGCTCTTCACATTGTCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGTCTTC 481891 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| |||||||| Sbjct 481892 CCTGTCAATGTCTTCACGAAGATTTGCAT 481920 >seq1 Length=1779776 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 ||||||| |||||||||||| | || | ||| |||||||| ||||| || || | Sbjct 1522660 CCTTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 1522601 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 | | ||||||||| || || || ||||| || || || || || || ||| || || Sbjct 1522600 TAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGT 1522541 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || ||||| |||||||| || || || | || || |||| Sbjct 1522540 CGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGA 1522481 Query 134704 AAATTTGCA 134712 | || |||| Sbjct 1522480 AGATCTGCA 1522472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396890122280