Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13 251 1e-61 seq37 87.8 2e-12 >seq13 Length=863668 Score = 251 bits (278), Expect = 1e-61 Identities = 1199/1877 (64%), Gaps = 45/1877 (2%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGT-GAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAG 68432 ||||| ||||| ||| ||| | |||| | ||| || || |||||||| ||||| ||||| Sbjct 289318 GTAAATTGAATAGGTTGAGCA-GCGGCCTGTGTTCGGAGGTAGTACATGCCGGTCTTCAG 289260 Query 68433 ACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTAT 68492 ||| || |||| || ||| ||||| ||||| | |||| | || || || Sbjct 289259 ACCGAGTTTCCACCCAGCGAAGTGCATGCTTGTGATTTTGCCCATGGTAGGCTCTCTCAT 289200 Query 68493 ATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTAT 68552 || ||||| | || ||| ||||| || || || || | ||| || ||||||| | Sbjct 289199 GTGGATATTGAGAGACTGAGACTGATCAATAAATGCACCACGATCAGCAGCCATTTGGAC 289140 Query 68553 AATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG 68612 || | || | ||| ||||| | || || | | |||| ||| || | Sbjct 289139 AACTGTGCGCTGGGAAATCTCCCAGACGGTTTTGTATAGTGCCTTGACCTCAGTGGGTAT 289080 Query 68613 GCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATT 68669 || | |||| || ||||| || |||| ||||| |||||| || | ||| Sbjct 289079 ACTAGGAATATTCTGGATGGAACCGTTTTCGGCAATAATACGATTCTTCATATTGTCAGA 289020 Query 68670 CCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCC 68729 ||||| | ||| || | | | || || ||||| || | || || || || Sbjct 289019 CCACAGTCCCAAATCCACTAGATCCTTGAGTAGCCAGGGATTGACGACCTGGAACTCGCC 288960 Query 68730 AGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCC 68789 | || || | ||||| |||||| || || || ||||| | | || || || || Sbjct 288959 TGCCAAGACGCGACGAGAGTAAATGTTTGAAGTGTAAGGTTCAAAGCACTCGTTGTTACC 288900 Query 68790 CAGAATTTGAGCAGTTGAT-GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 68848 || || || | || || | |||||||||||||| |||| | | |||||| | | || Sbjct 288899 CAAGATCTGCG-AGGTGCTAGCAGTTGGCATAGGAGCCATGAGAAGACTATTGCGTACAC 288841 Query 68849 CATG-TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACA 68907 |||| || | |||| | ||||| ||| ||| |||||||||||||| || |||| Sbjct 288840 CATGCTGCT-TGATCTGCTCTTTGAGAGCAGCCCAGTCCCAAAGATCAGAGGGGGTAACA 288782 Query 68908 TTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAA 68967 | ||| | |||||| || || || || | || ||| || | || || |||| Sbjct 288781 TCCCACATATCGTACTGGAGGATGCCTTGGGAAACAGGTGAACCCTCGTAAGTAGAATAA 288722 Query 68968 GGTCCTTCCTGTTCAGCTAGTTCACAACT--TGCCTCTAATGCACCGTAATAAATTGTTT 69025 | || ||| || ||| | || | | | ||| || ||| ||| || || || | Sbjct 288721 GTACCCTCCACTTTAGCAA--TCTCCATTGATGCAGTCAAAGCAGCGTGGTACATAGTCT 288664 Query 69026 CGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAA 69085 |||| |||| ||| ||||| | | || ||| | || || || ||| | | Sbjct 288663 CGAAGATCTGCTTGTTGAGCTGCCGAGCCTCTGGTGATTCAAAAGGC--ATGCGGAGGGC 288606 Query 69086 TA--AATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA 69143 | || | ||| |||| || || || |||| ||| ||||||| || | | |||| | Sbjct 288605 GAGGAAGGTATCGGCCAGACCTTGGACACCAAGACCAATAGGTCGGTGACGCATATT-GC 288547 Query 69144 ACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGA 69202 || | || || || ||| |||| || || || | || || ||||| |||| Sbjct 288546 TGTTACGTGCCTCAATAACAGGGTAATGGTTTGCGTCGATGACCTTGTTCAGATTGCGGA 288487 Query 69203 CTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCG-TCCATCT-ATAACAAA 69260 | || |||| | || || | ||| || | || | | | | || | | |||| | Sbjct 288486 CAACAACTTGAGTAACCTCATGTAGCTTTTGGAAGTTATAGCTCTCTGTGTGATAATCCA 288427 Query 69261 CATATT----CAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCAT 69316 | || ||| || | ||||||||| || ||||| || || |||| | || || Sbjct 288426 CGAATGATGGCAGGGCCATAGATGCTAGGTTGCAAACAGCAACTTCATCTGGGGCTGAAT 288367 Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376 | | || ||||| || || ||||| | ||| || || | ||| | ||| || | Sbjct 288366 ACTCGATGATCTCGGTGCAGAGATTGGAGCTGCGGATTGTGCCTAAATTCTTCTGGTTGC 288307 Query 69377 TCTTTTTGTTA-CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 |||| || || | |||||||| || || || || | || ||||| |||||| | Sbjct 288306 TCTTGCGATTGGCATGA-TCCTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGTCTGAGCT 288248 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTAT-TACGGTCTTGTAACGCTTCTCTTT 69494 |||| || | | ||| | | ||| ||||| | | | | | || ||| Sbjct 288247 TCGAGGATGGCATACCAGAGCTTCTGAGCCTTTATCTTCTGGCG-GCCGCGACCCTCAGC 288189 Query 69495 TTCATA--TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 ||||| || ||| | |||| || || ||||| || | |||||| | | || || Sbjct 288188 CTCATACGTTTCGTAGAGAGCC--TCAAACTCATCACCGTAGACATCAGCAAGGCCGGGG 288131 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 || ||||| || ||||||| | |||| | | | | | || || ||||| || ||| Sbjct 288130 CACTCATTCGGGCACATCAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGA 288071 Query 69613 TCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672 || || |||||||| || | ||||| || | | | | ||| || || || ||| Sbjct 288070 TCAGGGATCCAAAGGGCCAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCCCATGATTC 288011 Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732 ||| ||||| || ||||| | | ||| || ||||||||||| ||||| || || | | Sbjct 288010 TTTCGCAGATCTAGGAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGATGGCGAAG 287951 Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 | || || || || || || || ||||| | ||| | || |||||||| |||| | | Sbjct 287950 GCGCCAGGCCGCTTGTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGACACGC 287891 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 ||||| |||| |||||| |||||| |||| || ||||||| || ||| || | || Sbjct 287890 AGCATGGGAACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCA 287831 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 || || || | || || || ||||| ||||| || || || | |||||| Sbjct 287830 CGGATGCGGTGAACATTGAGGCCAATGCCTCCAGCCATCTTTGAAATCATAGCACATGTC 287771 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| || ||||| |||||||| || |||||| | | ||||| Sbjct 287770 TTCAAGGTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAACAAGAC 287711 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 ||||| || | || ||||| ||||| || | ||| ||||| || || ||||| || Sbjct 287710 GACATCTGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTGAAGAAT 287651 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC----CCACTGATGAAT 70088 || || | || ||||| || || | | || || || || | |||| Sbjct 287650 TTAAGGGACATGAGGTTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCCCCAGATG--- 287594 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 || | ||| || ||||| | ||| |||||||||| || || | || || ||||| Sbjct 287593 -CCGACCGCCACGCGCATGATCATGTGCTGAGGTCTCTCAACAATCTTGCCGTTGATTTT 287535 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTT 70206 | ||||| || |||| || || || |||||||| | ||| ||||| || | Sbjct 287534 GAGAAGGTAGGACCGCTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGAAA--TCGCGG 287477 Query 70207 TCGTAAATAATAACAGA 70223 ||||| | ||| |||| Sbjct 287476 TCGTATACAATGGCAGA 287460 >seq37 Length=418716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || || ||||| || ||| ||||| || |||||||| || | || || | || Sbjct 51208 TCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCACCGAGCCTCGGGGATC 51149 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || ||||| || ||| | ||| | | || || || || || |||||| |||||| Sbjct 51148 TGAACCTCGCCACTAAAACGCTCCACAAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 51089 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090 || || |||| | || ||||||||||| ||||| | | | || |||||| Sbjct 51088 AAGAAGGCCAGGATGTGAGAGATAAAATATTTCTCATCCTCATTGATTCGGTTGTTCCAG 51029 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | ||||| || || | || | || ||||| ||||| || || || || ||||| Sbjct 51028 TCGTGCATATCCTTGGAGAGGTCAATCTCCTCAGCAGTCCAGAAGGAGGCTTCAGCCTTC 50969 Query 40151 TTGTACATGTTCCATAT 40167 |||||||| | ||| || Sbjct 50968 TTGTACATTTGCCAGAT 50952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 295/456 (65%), Gaps = 5/456 (1%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || ||| || ||||| ||||| ||||| ||||| || || || || ||||| | Sbjct 51866 CATCACACCCGCCTTCTGGTAATCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCACC 51807 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTG--CATTATAtttttttttAAAT 39430 | || || || |||||||| || ||||| || | | | || | || | | | Sbjct 51806 GAGCGAGATGTTCTCCATGAAGTCGAACGGGTTGGAAGAGCGGTAGACCTTCTCATTA-- 51749 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || | | | || | || |||||||| || |||||| ||||||| | Sbjct 51748 CCCAGAGCGACGAGCAGACGGTCAGCAACAAACTCGATGTATTGCTTCATCAGGTTGGCG 51689 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 ||||| || | || || || ||||| || || ||||||| || || | ||| Sbjct 51688 TTCATGCCGAGCAGAGCGCACGGCAGCGCCTCTGTCAGGAACTCTTGCTCAATCTTGACG 51629 Query 39551 GCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAAC 39610 || || || | || || ||||| | ||| ||| | | | | || ||| Sbjct 51628 GCATCGACGATGACCGCCTCCACGACCTCCTTACTGGGTCGGTTCTTCAGGTGAGAGAAC 51569 Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 | | |||||| ||||| ||| || ||||| || | || | ||||| || || Sbjct 51568 AGCAGGCAGGCAAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAA 51509 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAA 39730 || || |||||||| ||||||||||| |||||||| || || | || |||| ||| Sbjct 51508 GTCAGGCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGATGCGAAAGCACCACTG 51449 Query 39731 AAGAAGATGCCTTCTACTGCTGCAAATGCAA-CAAG 39765 |||||||| || || || || ||||| |||| |||| Sbjct 51448 AAGAAGATACCCTCCACAGCGGCAAAGGCAATCAAG 51413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906747859960