Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq25 118 9e-22 seq13 114 1e-20 >seq25 Length=549874 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| |||||||| |||| ||||| | || || ||||| ||||| Sbjct 481724 GTCGACTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCCTCCAGCTGCTTACCA 481783 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | |||||||| ||||| ||||| || | |||||| || || ||||||| | ||| Sbjct 481784 GCAAAGATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTC 481843 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || |||| | ||| ||||| || || || | || || |||| || Sbjct 481844 ACATTGTCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGTCTTCCCTGTCAATGTC 481903 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| |||||||||||| Sbjct 481904 TTCACGAAGATTTGCATA 481921 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || | || | || || || || || |||||||||||||||||||| Sbjct 481922 CCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTT 481981 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||| ||||| || | |||||||| || || ||||| || Sbjct 481982 AGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 482041 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||| ||| | |||| | || | || |||| | ||| || Sbjct 482042 ATACCCTCCTTGTCCTGGATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCACC 482101 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || || || || |||||||| |||||||| Sbjct 482102 TCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCAT 482148 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||||||||||| | | || |||| |||||||| || || Sbjct 482180 GTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCGTCCTCGAGCTGCTTGCCA 482239 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || ||||| || || || || | || |||||||| |||||| || Sbjct 482240 GCAAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTCGACTTT 482299 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | || ||||||| ||| Sbjct 482300 ACGTTGTCGATCGTGTCGGATGACTCAACCTCGAGCGTAATCGTCTTTCCCGTCAAGGTT 482359 Query 27231 TTCAC 27235 || || Sbjct 482360 TTGAC 482364 >seq13 Length=863668 Score = 114 bits (126), Expect = 1e-20 Identities = 427/661 (65%), Gaps = 35/661 (5%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || || | || ||||| |||| |||| ||||||||| ||| || |||||||| || Sbjct 288134 GGGGCACTCATTCGGGCACATCAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAA 288075 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 | ||| || | ||| | || | || || || | ||| || || | ||||| Sbjct 288074 GAGATCAGGGATCCAAAGGGCCAAGAAGAGGTCACGAGCGCGAACTTCCTCCTT-CCCAT 288016 Query 131722 AAttttttt-CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTG 131780 ||| ||| || || || || || || | |||| ||||| ||||| | ||| | | Sbjct 288015 GATTCTTTCGCAGATCTAGGAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGATGG 287956 Query 131781 CCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATA 131837 | | ||||| ||||| ||| ||||||| || | |||| || |||| ||| | | Sbjct 287955 CGAAGGCGCCAGGCCGCTTGTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGA 287896 Query 131838 CGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCAT 131897 | |||| |||||| | | |||||| | | || || || | ||||| ||| Sbjct 287895 CACGCAGCATGGGAACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCG 287836 Query 131898 TGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCG 131956 |||| | ||| |||||| ||||| ||||| ||||| ||| | ||| || || | || Sbjct 287835 TGGCACGGATGCGGTGAACATTGAGGCCAATGCCTCCAGCCATCTTT-GAAATCATAGCA 287777 Query 131957 CATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAG 132016 ||| | | | || | ||| || || || | ||| || | ||||||||||| || Sbjct 287776 CATGTCTTCAAGGTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAA 287717 Query 132017 CAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTA 132076 ||||| |||| ||| | || ||| ||||| || | ||| || || || || Sbjct 287716 CAAGACGACATCTGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTG 287657 Query 132077 AAAAGTTTTTTGGCCATGCACCGATACGATTGTA----TAGCGGA----CTCGATATCG- 132127 || | ||| || |||| | ||||| | | ||| |||||| ||| Sbjct 287656 AAGAATTTAAGGGACATG--------AGGTTGTAGGTCTCGAGGACCCTCTCGATGTCGT 287605 Query 132128 ---CCCAGATGTATGGTCAATGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTT 132184 ||||| ||| | || || |||||| |||||| ||| | ||| | | Sbjct 287604 CTCCCCAG----ATGCCGACCGCCACGCGCATGATCATGTGCTGAGGTCTCTCAACAATC 287549 Query 132185 TTGCCGTCGATTTTGATCAAATA--ACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGT 132242 ||||||| |||||||| | || |||| ||||| || ||||| |||||||||| || Sbjct 287548 TTGCCGTTGATTTTGAGAAGGTAGGACCG--CTCCAACGTCTTGAAGCCAAAATATTGGT 287491 Query 132243 A 132243 | Sbjct 287490 A 287490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933162245768