Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq13 138 1e-27 seq37 105 8e-18 >seq13 Length=863668 Score = 138 bits (152), Expect = 1e-27 Identities = 629/985 (64%), Gaps = 18/985 (2%) Strand=Plus/Minus Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| || ||||||||||| |||||||||||||| || | ||| || || ||||| Sbjct 288928 GTGTAAGGTTCAAAGCACTCGTTGTTACCCAAGATCTGCGAGGTGCTAGCAGTTGGCATA 288869 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || ||||||||||| || || || | ||| | | | | || | || |||||||| || Sbjct 288868 GGAGCCATGAGAAGACTATTGCGTACACCATGCTGCTTGATCTGCTCTTTGAGAGCAGCC 288809 Query 118314 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 118371 ||||| | | | || | | | ||||||||| |||||||||| ||||||| Sbjct 288808 CAGTCCCAAAGATCAGAGGGGGTAACATC--CCACATATCGTACTGGAGGATGCCTTGGG 288751 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 118431 | | || || ||||| | || ||| | ||||| || | || | || | Sbjct 288750 AAACAGGTGAACCCTCGTAAGTAGAATAAGTACCCTCCACTTTAGCAATCTCCATTGATG 288691 Query 118432 CCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCG 118490 | | || ||||| ||||| || || || || | || | |||| | |||| Sbjct 288690 CAGTCAAAGCAGCGTGGTACATAGTCTCGAAGATCTGCTTGTTGAGCTGCCGAG-CCTCT 288632 Query 118491 TCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 118550 || ||||| | | ||| | || ||| || |||||||||||||| || Sbjct 288631 GGTGATTCAAAAGGCATGCGGAGGGCGAGGAAGGTATCGGCCAGACCTTGGACACCAAGA 288572 Query 118551 CCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA---CGGGATAAAAATTC 118607 ||||| || || || | |||||| || || || ||| | | || ||| || Sbjct 288571 CCAATAGGTCGGTGACGCATATTGCTGTTACGTGC---CTCAATAACAGGGTAATGGTTT 288515 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 118667 ||||| ||| | || ||||| | ||||| | || | ||||| ||||||| | Sbjct 288514 GCGTCGATGACCTTGTTCAGATTGCGGACAACAACTTGAGTAACCTCATGTAGCTTTTGG 288455 Query 118668 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 118727 | | | | || || | | || || | || ||||| || || || || || Sbjct 288454 AAGTTATAGCTCTCTGTGTGATAATCCACGAATGATGGCAGGGCCATAGATGCTAGGTTG 288395 Query 118728 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTC 118787 || |||| ||||| | | ||||| || || || ||||| | || || || Sbjct 288394 CAAACAGCAACTTCATCTGGGGCTGAATACTCGATGATCTCGGTGCAGAGATTGGAGCTG 288335 Query 118788 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA-CACGCATCCTTGTAAAGCAT 118846 || ||||| || ||||| || || ||| || || | ||||||||| ||||| Sbjct 288334 CGGATTGTGCCTAAATTCTTCTGGTTGCTCTTGCGATTGGCATG-ATCCTTGTAGAGCAT 288276 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTG 118905 | | || | || || || || || | | ||| || || | ||||| | || | || Sbjct 288275 GAAGGGGTTGCCGGTTTCTGTCTGAGCTTCGAGGATGGCATACCAGAGCTTCTGAGCCTT 288216 Query 118906 GCACAG-TGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCT 118964 | ||||| | | || ||||| |||| ||| || |||||| || |||||||| Sbjct 288215 TATCTTCTGGCG--GCCGCGACCCTCAGCCTCATACGTTTCGTAGAGAGCCTCAAACTCA 288158 Query 118965 TCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 119024 ||||| | | || | || || || || || ||||| | || | ||| | || Sbjct 288157 TCACCGTAGACATCAGCAAGGCCGGGGCACTCATTCGGGCACATCAGCGTCCACTCGCCG 288098 Query 119025 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 119084 || || || |||||||||||||| || |||||||| || ||| ||||||| || ||| Sbjct 288097 TTCTTTTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGCCAAGAAGAGGTCACGA 288038 Query 119085 CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCG 119144 |||| |||| || | ||| ||||| |||| || | || || | | ||||| | Sbjct 288037 GCGCGAACTTCCTCCTTCCCATGATTCTTTCGCAGATCTAGGAACTCAAACACATCCGAG 287978 Query 119145 TGCCACGGTTCCAGGTACACCGCGA 119169 ||||| ||||| || || | |||| Sbjct 287977 TGCCATGGTTCAAGATAGATGGCGA 287953 >seq37 Length=418716 Score = 105 bits (116), Expect = 8e-18 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || || ||||||||||||||||||||||| || || ||||| ||| || Sbjct 51560 GGCAAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTCAGGCC 51501 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| ||||| |||||||| | |||||| || | || | ||| ||||||||| Sbjct 51500 AGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGATGCGAAAGCACCACTGAAGAAGAT 51441 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC--- 130191 ||||||||| || || |||| | |||| ||||||| ||| || ||| Sbjct 51440 ACCCTCCACAGCGGCAAAGGCAATCAAGCGCTGGGCAAAGG---TGGAGTTGCGATCGCT 51384 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTT 130221 || |||||||| ||||| | ||||| || Sbjct 51383 AATCCACTTCAGGGCCCAGTCAGCCTTCTT 51354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433352424840