Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 188 2e-42 seq25 152 2e-31 seq10 102 2e-16 >seq2 Length=1500191 Score = 188 bits (208), Expect = 2e-42 Identities = 487/736 (66%), Gaps = 6/736 (1%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| |||| || || || || || || ||||| ||||| | ||| | | | | || | Sbjct 1249148 CCGCCGTAGGTATTGACTTGGGCACGACCTATTCGTGTGTCGGTGTCTACCGAGACGACC 1249089 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || ||||| ||||| || |||||| | ||||| || || | ||| || || | Sbjct 1249088 GGATCGAGATCATTGCCAATGACCAGGGTAACCGCACAACACCCTCGTTCGTCGCCTTCA 1249029 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 | || || |||||| |||| || ||| | || || || || | || || || | Sbjct 1249028 CAGATACCGAGCGTCTGATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTGCCA 1248969 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAAT 349436 | || || || || || ||||| || || || | | || | ||| | || Sbjct 1248968 ACACAGTATTCGACGCCAAGCGCCTAATCGGCCGCAAGTTCGCCGACCAGGAGGTTCAGG 1248909 Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496 ||||| | || || || || || | | || | ||| |||| || || || | | Sbjct 1248908 CTGATATGAAGCACTTCCCCTTCAAGATCATTG-ACAAG--GGTGGCAAGCCTATCGTCG 1248852 Query 349497 AGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 ||||||| || || || || || || || | | ||||| ||||| || || ||||| Sbjct 1248851 AGGTTGAGTACAAGGGCGAGACCAAGACCTTCACT-CCCGAGGAAATCTCCTCCATGGTC 1248793 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | | || ||| || | || || || ||| | || | || || | | ||||| Sbjct 1248792 CTGATCAAGATGCGCGAGACCGCAGAGGCTTATCTCGGCGGCACCGTCAACAACGCTGTC 1248733 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 || || || || ||||| || || || ||||||||| || || || || | ||| Sbjct 1248732 ATCACCGTCCCTGCCTACTTCAACGACGCCCAGCGTCAGGCTACCAAGGACTCCGGCCTG 1248673 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | ||||| || | || || || || || ||||| || || ||||| || Sbjct 1248672 ATTGCCGGCCTGAATGTCCTCCGTATCATCAACGAGCCTACTGCCGCCGCCATTGCCTAC 1248613 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || || | | || || || |||| || || ||| | ||||||||| Sbjct 1248612 GGTCTCGACAAGAAGGTCGAGGGTGAGCGCAACGTTCTGATCTTCGATCTTGGTGGTGGT 1248553 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || ||||| || | ||||| Sbjct 1248552 ACATTCGATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAAGTCAAGTCTACTGCC 1248493 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 |||||||| || || ||||| || |||||||| || ||||| || || || |||| Sbjct 1248492 GGTGATACCCACCTGGGTGGTGAGGATTTTGACAACCGTCTTGTCAACCACTTCGTTACT 1248433 Query 349916 GAATTTAAGCGTCAAG 349931 ||||||||||| |||| Sbjct 1248432 GAATTTAAGCG-CAAG 1248418 >seq25 Length=549874 Score = 152 bits (168), Expect = 2e-31 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| || | ||||| || || | || ||||| ||||||||||| | Sbjct 481914 TTTGCATACCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGT 481973 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || ||||| || || || || ||||||||||| ||||||||||| | Sbjct 481974 AGTCGCTTAGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGT 482033 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | ||||| || || || || ||||| ||||| ||| || ||||| || || | ||| || Sbjct 482034 CCGGAGGGATACCCTCCTTGTCCTGGATTTT-GCTCTTCACATTGTCGATGGTATCTGAA 482092 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||| || || || || | |||||||| || || || || ||||| || ||||| Sbjct 482093 GATTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCAT 482148 Score = 129 bits (142), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554 || ||||||| ||| |||||||| | | || ||||| || || || || || || || Sbjct 482135 ACAAATATTTG-CATGCCACCACGAAGACGGAGCACAAGGTGGAGGGTGGATTCCTTCTG 482193 Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACG 140614 ||| || || || | ||||| || || || || || || |||||||| || || || Sbjct 482194 AATGTTGTAGTCGCTCAGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCG 482253 Query 140615 TTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGA 140674 ||||| || |||||||| |||||||||||||| || || | ||||| || || |||| Sbjct 482254 CTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTCGACTTTACGTTGTCGATCGT 482313 Query 140675 ATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || |||| ||||| || || |||| |||||||| || | ||||| || Sbjct 482314 GTCGGATGACTCAACCTCGAGCGTAATCGTCTTTCCCGTCAAGGTTTTGAC 482364 Score = 120 bits (132), Expect = 9e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || |||||||| ||||| || || ||| | || |||||||| Sbjct 481709 AGGACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCC 481768 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| |||||||| || || || || || || || || ||| Sbjct 481769 TCCAGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCC 481828 Query 140646 TGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 || || || ||| || ||||| || || | ||| || | ||| ||||| || || | || Sbjct 481829 TGGATCTT-GCTCTTCACATTGTCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGT 481887 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || | ||| || || || || ||||| Sbjct 481888 CTTCCCTGTCAATGTCTTCACGAAGATTTGCAT 481920 >seq10 Length=958652 Score = 102 bits (112), Expect = 2e-16 Identities = 196/284 (69%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| || || || || || || ||||||| || || || ||||| Sbjct 563797 GCCGTCATCACTGTCCCGGCTTACTTCAACGACAACCAGCGTCAGGCCACCAAGGATGCC 563856 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 ||| ||| | || | || ||||| | || ||||| || ||||||||||| || ||| Sbjct 563857 GGCGCTATTTCTGGACTTAACGTTCTTCGTATTATTAACGAGCCCACTGCTGCCGCTATT 563916 Query 349730 GCATATGGGCT-TGATAAAATGAGT--GACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 || || || || | | |||| | | || | || || | || || | ||| | Sbjct 563917 GCCTACGGCCTGGGCTCAAATAAATCAAACAAGGAGCGCAACGTCCTGATCTACGATCTT 563976 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACT-AACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 |||||||||||||| |||||||| || || |||| | | | || | || || || Sbjct 563977 GGTGGTGGTACTTTCGATGTATCCCTTCTGAACA-TCCAGGGTGGTGTCTTCACCGTCAA 564035 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 || || ||||||||||| ||||||||||| ||||||| |||| Sbjct 564036 GGCCACCGCTGGTGATACCCATCTTGGTGGCCAAGATTTCGATA 564079 Score = 98.7 bits (108), Expect = 3e-15 Identities = 170/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 378202 TCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCA 378261 ||||| | ||||| | || ||||| ||||||||| |||| | |||||| || || Sbjct 513008 TCTTCGAGGGCTTTGACTAGACGTCGTTGAATATAACCTGTTTCAGCAGTTTTCACGGCC 512949 Query 378262 GTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGT 378321 ||||| || | ||| |||| || |||| || || ||| | ||||| | ||| || | Sbjct 512948 GTATCGATAAGACCCTCACGGCCTGCCATAGCGTGAAAGTAGAATTCTGAAGGGGTCAAG 512889 Query 378322 CCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTA 378381 || | | ||||| |||||| ||| || | || |||| || | |||| ||||| Sbjct 512888 CCTCTCAGGTATGAATTCTCAACAAACCCACGCGCTTCTGGGGAGTAGTCATCCTTTGTG 512829 Query 378382 TAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGT 378441 | ||||| || || || | | || || | || || ||||| || |||||| |||| Sbjct 512828 AAGTGAGGCAAGGTCCGGTATTTGAAGCCGAAGGGGATGCGTTTACCCTCAACAACCTGT 512769 Query 378442 TGACCAA 378448 ||||||| Sbjct 512768 TGACCAA 512762 Score = 89.7 bits (98), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 377450 CTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGA 377509 ||||| | ||||| |||||| | ||||| ||| || ||||| | ||||| || |||| Sbjct 513783 CTTCAGT-CGTGGGACACCAAGAGTAACGTTC---TTCGATGCGATACCAGTGAAATGGA 513728 Query 377510 AAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAA 377569 | ||||| | || | ||| || | || |||||||||||||| || || | ||| || | Sbjct 513727 AGGTATTCAATGTCATTTGGGTGGCCGGTTCACCAATTGACTGAGCAGCCAAAACACCCA 513668 Query 377570 CCATTTCTCCAGGATTGACAATAGC 377594 ||||||| || || ||||| || || Sbjct 513667 CCATTTCACCTGGGTTGACCATGGC 513643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515249760006917