Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13 219 5e-52 seq37 104 3e-17 >seq13 Length=863668 Score = 219 bits (242), Expect = 5e-52 Identities = 515/771 (67%), Gaps = 6/771 (1%) Strand=Plus/Plus Query 53170 TGGTGAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTA 53229 || ||||| |||||| | | |||||||||| || | || ||| || |||||| Sbjct 287552 TGTTGAGAGACCTCAGCACATGATCATGCGCGTGGCGGTCGGCATCTGGGGAGACGACAT 287611 Query 53230 CACGCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCC 53289 | | | |||| ||||| ||| || | ||| || || | ||| || || || | || Sbjct 287612 CGAGAGGGTCCTCGAGACCTACAACCTCATGTCCCTTAAATTCTTCACCCATGCTTCTCC 287671 Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349 || || ||||| || || || || || ||||||||| || ||| | || | || Sbjct 287672 GACACTCTTCAATGCCGGAACACCGCAACCCCAGATGTCGTCTTGTTTCTTAGTCGACAT 287731 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 |||||| || ||||| || || || || || | ||| ||||| || || || Sbjct 287732 GAAGGACGATAGCATCGAGGGAATTTATGATACCTTGAAGACATGTGCTATGATTTCAAA 287791 Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATC 53467 | | | || || || || || | || || | || ||||||| | ||| | ||| Sbjct 287792 GATGGCTGGAGGCATTGGCCTCAA-TGTTC-ACCGCATCCGTGCCACGGGCTCTTACATC 287849 Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527 || || ||||| | | || || || || ||||| || |||||||| |||||| Sbjct 287850 GCTGGAACTAACGGTACATCTAACGGTATTGTTCCCATGCTGCGTGTCTTCAATAACACG 287909 Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587 || || |||||| | || |||||| ||||| || | ||||||||||| || || Sbjct 287910 GCTCGTTACGTCGATCAAGGTGGTAACAAGCGGCCTGGCGCCTTCGCCATCTATCTTGAA 287969 Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647 || |||||| | || | | ||||| || || ||||| |||||| || | || || Sbjct 287970 CCATGGCACTCGGATGTGTTTGAGTTCCTAGATCTGCGAAAGAATCATGGGAAGGAGGAA 288029 Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 | ||| |||||||| || || || ||||| || || ||||||||| | || Sbjct 288030 GTTCGCGCTCGTGACCTCTTCTTGGCCCTTTGGATCCCTGATCTCTTCATGAAGCGTGTC 288089 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTC 53767 || ||| ||| |||||| |||||||||||||| |||||||||||||| | |||| Sbjct 288090 GAAAAGAACGGCGAGTGGACGCTGATGTGCCCGAATGAGTGCCCCGGCCTTGCTGATGTC 288149 Query 53768 TACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAG 53827 |||||||| |||||| | | | || ||||| | | | |||| ||| | || Sbjct 288150 TACGGTGATGAGTTTGAGGCTCTCTACGAAACGTATGAGGCTGAGGGTCGCGGCCGCCAG 288209 Query 53828 AAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAAC 53886 ||| | ||||| | || | ||| |||| |||||| | ||| ||| || || || | Sbjct 288210 AAGATAAAGGCTCAGAAGCTCTGGTATGCCATCCTCGA-AGCTCAGACAGAAACCGGCAA 288268 Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 || | |||| |||||||||| | ||| ||||||||||||||||| Sbjct 288269 CCCCTTCATGCTCTACAAGGATCATGCCAATCGCAAGAGCAACCAGAAGAA 288319 >seq37 Length=418716 Score = 104 bits (114), Expect = 3e-17 Identities = 304/460 (66%), Gaps = 19/460 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 ||||||||||| ||||| ||||| ||||||||||| || | | ||||||||||||||| Sbjct 51847 TAATCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGCGAGATGTTCTCCATG 51788 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATG---AGG 74579 ||||||| ||||| | | ||| | |||||| | | | || | | || Sbjct 51787 AAGTCGAACGGGTTGGAAGAGCGGTAGA---CCTTCTCATTACCCAGAGCGACGAGCAGA 51731 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || ||||| | ||||| ||| |||| || | |||||||| || | Sbjct 51730 CGGTCAGCAACAAACTCGATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGAGCG 51671 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCT----CGCA-AGCCCATTGGACAA 74694 |||||||| ||||| || | ||||| ||| | || ||| | | || ||| Sbjct 51670 CACGGCAGCGCCTCTGTCAGGAACTCTTGCTCAATCTTGACGGCATCGACGAT--GACCG 51613 Query 74695 TCTTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 || | || || || | || | ||||||||||| | ||| | || |||| Sbjct 51612 CCTCCACGACCTCCTTACTGGGTCGGTT---CTTCAGGTGAGAGAACAGCAGGCA-GGCA 51557 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || || ||| || || || | | || | || || || || | ||||||||| Sbjct 51556 AAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGGC 51497 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 || || ||||||||||| | ||| ||||| | ||| | ||||||||||||||| || Sbjct 51496 ATCAGACCACGCTTCTTGAGCCAGAAGATAGATGCGAAAGCACCACTGAAGAAGATACCC 51437 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913 || ||| |||||||| | | ||| || || || |||| Sbjct 51436 TCCACAGCGGCAAAGGCAATCAAGCGCTGGGC-AAAGGTG 51398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214365192200