Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13 237 2e-57 seq25 170 2e-37 seq92 158 1e-33 seq1 140 4e-28 >seq13 Length=863668 Score = 237 bits (262), Expect = 2e-57 Identities = 920/1430 (64%), Gaps = 48/1430 (3%) Strand=Plus/Minus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTTGTAGTGTAAGGCTCAAATGCCTC 80414 ||||| || || | | |||||| ||| || | ||||| ||||||||| ||||| ||| Sbjct 288967 AACTCGCCTGCCAAGACGCGACG-AGAGTAAATGTTTGAAGTGTAAGGTTCAAAGCACTC 288909 Query 80415 GTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATT 80474 |||||| || | |||||| | ||||| || || ||||| || | | | || ||| Sbjct 288908 GTTGTTACCCAAGATCTGCGAGGTGCTAGCAGTTGGCATAGGAGCCATGAGAAGACTATT 288849 Query 80475 CCGCAGGCCGTGCTTCTTGATATCCTC-----GCGCAAATCTGACCAAAA-ATCAACCCC 80528 || | || |||| |||||| | ||| | ||| | | || ||| |||| Sbjct 288848 GCGTACACCATGCTGCTTGATCTGCTCTTTGAGAGCAGCCCAGTCCCAAAGATCAG---- 288793 Query 80529 AACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCG 80586 | | || || ||||||| |||| ||| | |||||| | || | || || ||| || Sbjct 288792 -AGGGGGTAACATCCCACATATCGTACTGGAGGATGCCTTGGGAAACAGGTGAACCCTCG 288734 Query 80587 AACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGA 80646 | || || | |||||| || || | ||| || | | | || ||||| Sbjct 288733 TAAGTAGAATAAGTACCCTCCACTTTAGCAATCTCCATTGATGCAGTCAAAGCAGCGTGG 288674 Query 80647 TAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAG 80706 || || ||| |||| |||||| | || |||| ||| || || | || | Sbjct 288673 TACATAGTCTCGAAGATCTGCTTGTTGAGCTGCCGAGCCTCTGGTGATTCAAAAGGCATG 288614 Query 80707 CCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGC 80766 | | | ||| || ||||| || || || || | | || || ||||| ||| Sbjct 288613 CGGAGGGCGAGGAAGGTATCGGCCAGACCTTGGACACCAAGACCAATAGGTCGGTGACGC 288554 Query 80767 TTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAG 80825 | || | | || ||||| || |||||| ||| |||||||| |||||| Sbjct 288553 ATATT-GCTGTTACGTGCCTCAATAACAGGGTAATGGTTTGCGTCGATGACCTTGTTCAG 288495 Query 80826 GTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT-----TG-GTT 80879 ||||| |||||| | ||||| ||||| || || || |||| | || || Sbjct 288494 ATTGCGGACAACAACTTGAGTAACCTCATGTAGCTTTTGGAAGTTATAGCTCTCTGTGTG 288435 Query 80880 CCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGC 80939 | ||| |||| || ||| || || || || ||||| || || || || || | Sbjct 288434 ATAATCCACGAATGATGGCAGGGCCATAGATGCTAGGTTGCAAACAGCAACTTCATCTGG 288375 Query 80940 ATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTT 80999 ||| | |||||| ||| || ||||| | ||| || ||||| || | || || Sbjct 288374 GGCTGAATACTCGATGATCTCGGTGCAGAGATTGGAGCTGCGGATTGTGCCTAAATTCTT 288315 Query 81000 CTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGAC 81059 |||||| |||| ||| | ||||||||| |||| | ||| | ||||| || Sbjct 288314 CTGGTTGCTCTTGCGATTGGCATGATCCTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGT 288255 Query 81060 CTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCC 81119 ||| | | ||||||||| | ||| | || | ||||| | | || |||| || Sbjct 288254 CTGAGCTTCGAGGATGGCATACCAGAGCTTCTGAGCCTTTATCTTCTGGCGGCCGCGACC 288195 Query 81120 TTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTC 81179 || ||| ||||| | |||| | || |||| |||||| | |||| ||| | Sbjct 288194 CTCAGCCTCATACGTTTCGTAGAGAGCCTCAAACTCATCACCGTAGACATCAGCAAGGCC 288135 Query 81180 TGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239 |||||||| || ||||||||||| ||| ||| || || || ||| ||||||||| Sbjct 288134 GGGGCACTCATTCGGGCACATCAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAA 288075 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCC 81297 ||||||||||| ||||| ||| ||||| || |||||| | ||||| | || Sbjct 288074 GAGATCAGGGATCCAAAGGGCCAAGAAGAGGTCACG--AGCGCGAACTTCCTCCTTCCCA 288017 Query 81298 TGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACG 81357 || || |||| || || || || | | |||| |||||||| || ||||| | | Sbjct 288016 TGATTCTTTCGCAGATCTAGGAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGATG 287957 Query 81358 GCGA------TCGACCCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTA 81411 |||| | || |||| | ||||| || | ||||||||| || || || Sbjct 287956 GCGAAGGCGCCAGGCCGCTTGTTA---CCACCTTGATCGACGTAACGAGCCGTGTTATTG 287900 Query 81412 AATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGAC 81471 || ||||||| ||| || | ||||| | || |||||| || || |||| || Sbjct 287899 AAGACACGCAGCATGGGAACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAG 287840 Query 81472 CCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCT 81529 ||| |||| || | | || |||| || || ||||| || | | |||||||||| Sbjct 287839 CCCGTGGCACGGATGCGGTGAACATTG--AGGCCAATGCCTCCAGCCATCTTTGAAATCA 287782 Query 81530 GAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCA 81589 |||||| |||| ||| ||||||||||||||||||||||| | |||||||| | | Sbjct 287781 TAGCACATGTCTTCAAGGTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTA 287722 Query 81590 AGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGC-- 81647 ||||||| |||||||| || || ||||||||||| ||||| || | || Sbjct 287721 AGAAACAAGACGACATCTGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCAT 287662 Query 81648 --GTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCG 81705 ||||| ||| | | || ||||| |||| ||||| || ||| | || ||| Sbjct 287661 GGGTGAA-GAATTTAAGG---GACATGAGGTTGTAGGTCTCGAGGACCCTCTCGATGTCG 287606 Query 81706 TCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755 || || || |||| || || ||||| | ||||| ||| || |||| Sbjct 287605 TCTCCCCAGATGCCGACCGCCACGCGCATGATCATGTGCTGAGGTCTCTC 287556 >seq25 Length=549874 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| |||||||| || || ||||| || ||||| ||||| || || Sbjct 482148 ATGCAAATATTTGTGAAGACGCTCACTGGAAAGACCATCACTCTGGAGGTGGAATCTTCA 482089 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||| ||||| |||||||||||||| || ||||| |||||| Sbjct 482088 GATACCATCGACAATGTGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 482029 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||||||||| || ||||||| ||||| ||| ||||| ||| Sbjct 482028 CAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGACGTACGCTAAGCGACTACAAT 481969 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || | || ||||| | || | || ||||| Sbjct 481968 ATTCAAAAGGAGTCGACATTGCACCTAGTTCTCCGCTTGCGTGGTGG 481922 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||| || | || || ||||| ||||| || |||||||||||| || | || | Sbjct 482364 GTCAAAACCTTGACGGGAAAGACGATTACGCTCGAGGTTGAGTCATCCGACACGATCGAC 482305 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || ||||| || || || |||||||| ||||||||||| || ||| Sbjct 482304 AACGTAAAGTCGAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCAGCAGCGCCTGATT 482245 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596 |||||||| ||||| |||||||| | || ||||| ||| ||||| || | || ||||| Sbjct 482244 TTTGCTGGCAAGCAGCTCGAGGACGGCCGAACCCTGAGC-GACTACAACATTCAGAAGGA 482186 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| || || || || | |||||||| ||||| Sbjct 482185 ATCCACCCTCCACCTTGTGCTCCGTCTTCGTGGTGG 482150 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||| ||||| || || | ||||| ||||| Sbjct 482669 ATGCAGATCTTTGTCAAGACTCTCACCGGTAAGACGATCACCTTGGAGGTGGAGTCTTCC 482610 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||| ||||| || |||||||| |||||| Sbjct 482609 GACACAATCGACAACGTAAAGTCGAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 482550 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| |||||||| | || ||||| ||| || || || Sbjct 482549 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCAGC-GATTACAA 482491 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || | |||||||| || || Sbjct 482490 CATCCAGAAGGAGTCTACCCTCCATCTCGTGCTCCGTCTTCGTGGCGG 482443 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| || || || || || || || Sbjct 481920 ATGCAAATCTTCGTGAAGACATTGACAGGGAAGACGATCACCCTGGAAGTGGAATCGTCA 481861 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||| || || |||||||||||||| || || || ||||| Sbjct 481860 GATACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 481801 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||||||||| || ||||||| || || || ||||| || Sbjct 481800 CAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACTCTGAGTGACTACAAC 481741 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || || || || || || ||||||||| | |||||||| || || || Sbjct 481740 ATTCAGAAAGAGTCGACCCTGCATCTAGTCCTTCGTCTTCGTGGCGGGCA 481691 >seq92 Length=114681 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| ||||| || || || || |||||||| || || ||||| ||||| Sbjct 39582 ATCATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCT 39523 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 39522 AGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 39463 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || ||||| || ||||| |||||||||| |||||||| | || || Sbjct 39462 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTTTCGGATTAC 39403 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||| || || || || ||||||| || ||||| Sbjct 39402 AACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGG 39353 >seq1 Length=1779776 Score = 140 bits (154), Expect = 4e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 ||||| |||| ||||| |||||||| || || |||||||| ||||| || ||||| |||| Sbjct 1522466 CTATAGTGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACGCTCGAGGTCGAGT 1522525 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | || | || | ||| | || || || |||||||||||||| || ||||| | Sbjct 1522526 CCTCGGACACGATCGACAATGTAAAAAGCAAGATCCAGGACAAGGAGGGCATCCCTCCTG 1522585 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 ||||||||||||| || || ||||| ||||| |||||||| | || || || | |||| Sbjct 1522586 ACCAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACACTCTCCGACT 1522645 Query 27581 ATAATGTCCAAAAGG 27595 | || ||||||||| Sbjct 1522646 ACAACATCCAAAAGG 1522660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308696197680