Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq95 134 1e-26 >seq95 Length=111136 Score = 134 bits (148), Expect = 1e-26 Identities = 431/673 (64%), Gaps = 73/673 (11%) Strand=Plus/Plus Query 29837 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGG 29896 || ||||| || | ||||||| ||||||||| |||| |||| || || | || | Sbjct 11741 GTCGGAAACGGCCGCGGCTCCCGCTCGAGCTGTATCTTAAGCGCATCGACATGGTCACAG 11800 Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 || ||||| || ||||||| | ||| | ||| || || || | ||| | |||||| Sbjct 11801 TACACGTGGGCATCTCCCATGACGTGCGTCAAGCTG-CCGGGGACCAGCTCACAGACGTG 11859 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 || ||||||| || || || | ||||||||||||||| ||||| || ||||| ||||| Sbjct 11860 CGCGATCATGTGAGTAAGTAGCGCGTAGCTGGCGATGTTGAAGGGCACGCCGAGACCCAT 11919 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACA--CGAGA-------------GCTCTCCGTC--- 30057 ||| | |||| ||| || |||||||| ||| ||| ||||| Sbjct 11920 GTCGCAAGACCGCTGATACAGCTGACAGTGCAGATGCCCCTGCCTCCTCTCGCCGTCCTG 11979 Query 30058 GCTC---------------------------------ACGTAAAACTG---ACACATGGC 30081 || | ||||||||||| |||| Sbjct 11980 GCACGGTGTCCCGTTCTTCTCCGCGCGCGGGTAAGAGACGTAAAACTGGGCGAACAT--- 12036 Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 ||||||||| || || ||||| || ||| |||||||| |||| | |||||| Sbjct 12037 GTGGCACGGCGGCAGGGCCATCTTCTTCATGTCGGCCGGGTTCCAAGCGCTGAGGATGAT 12096 Query 30142 GCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGATC 30195 ||| | || | |||||||||| || || | | ||||| ||||| || Sbjct 12097 GCGGCGATCGTAGGGGTTGTTCCGCAGCTTGTGGATGACTTCGGCG------AGCTGGTC 12150 Query 30196 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30255 || ||| | |||| |||||| | || | || ||||||| || || || |||| ||| Sbjct 12151 AACGCCCTTGCCCGTGTAGTCGGTCCGCGCATCTATGTACTCGGCGCCAAAGTGCCGCCA 12210 Query 30256 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30315 |||||| ||||| || || ||||| || || | || | ||| ||||| |||| Sbjct 12211 CTGGAATCCGTAGACGGGGCCCAGATCACCGACCTCACGATGCGATAAGCCGACGCTGTC 12270 Query 30316 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375 | ||| || | || ||||| ||||||| ||||| ||||| || || | | | Sbjct 12271 TAGAAATTCGCGTGATCCGTTACCGTCCCAAATCTTGACCCCGGCTTCCGACAATGCCGT 12330 Query 30376 GGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30434 ||| |||| |||||| | ||||| |||||||| | || ||||| || ||| | Sbjct 12331 GGATGATGTGTTCCCCTCT-ATAAACCATAGCAGCTCGGCGACAACGGCTTTGAGAAATA 12389 Query 30435 CCCTCTTGGTCGT 30447 ||||||| ||||| Sbjct 12390 CCCTCTTCGTCGT 12402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309216493988