Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq92 107 1e-18 >seq92 Length=114681 Score = 107 bits (118), Expect = 1e-18 Identities = 160/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| || || Sbjct 39362 AGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAAAGGGTACGG 39421 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| ||||| || || | |||||| Sbjct 39422 CCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 39481 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT---CTCCACTTCCAC 34664 ||||| |||| || | || || | || ||| ||||| |||||| || | Sbjct 39482 TTGTCCTGGATC-TTGGACTTGACATTGTCGATGGTG---TCGCTAGACTCCACCTCGAG 39537 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| || || ||||| || | ||||| || || ||||||||| Sbjct 39538 GGTGATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 39580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728683251687