Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq25 109 5e-19 seq92 96.9 3e-15 >seq25 Length=549874 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| | || || | || ||||| | ||| Sbjct 482669 ATGCAGATCTTTGTCAAGACTCTCACCGGTAAGACGATCACCTTGGAGGTGGAGTCTTCC 482610 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || |||||||| || ||||| || Sbjct 482609 GACACAATCGACAACGTAAAGTCGAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 482550 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || ||| | ||| | |||||||||| Sbjct 482549 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCAGCGATTACAAC 482490 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || | ||| | || || || || Sbjct 482489 ATCCAGAAGGAGTCTACCCTCCATCTCGTGCTCCGTCTTCGTGGCGGTAT 482440 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || || || || ||| | || ||||| || |||||| | || Sbjct 482149 CATGCAAATATTTGTGAAGACGCTCACTGGAAAGACCATCACTCTGGAGGTGGAATCTTC 482090 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || || ||||| || ||||| || || || || || || || Sbjct 482089 AGATACCATCGACAATGTGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCTCCGGACCA 482030 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || || || || |||| || | || | ||| ||||| Sbjct 482029 GCAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGACGTACGCTAAGCGACTACAA 481970 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| || || | ||| | || ||||| ||||| || Sbjct 481969 TATTCAAAAGGAGTCGACATTGCACCTAGTTCTCCGCTTGCGTGGTGGTAT 481919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || ||||| |||| || ||| | ||||| || || || || | |||||| |||| || Sbjct 482364 GTCAAAACCTTGACGGGAAAGACGATTACGCTCGAGGTTGAGTCATCCGACACGATCGAC 482305 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | || || || || || || ||||||||||| || ||||| || ||||| | || Sbjct 482304 AACGTAAAGTCGAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCAGCAGCGCCTGATT 482245 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | || ||||| || | || ||| | ||| | ||| ||||||||||| ||||| Sbjct 482244 TTTGCTGGCAAGCAGCTCGAGGACGGCCGAACCCTGAGCGACTACAACATTCAGAAGGAA 482185 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||| | || | || | ||| | || |||||||| Sbjct 482184 TCCACCCTCCACCTTGTGCTCCGTCTTCGTGGTGGCAT 482147 >seq92 Length=114681 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || || ||| |||| || || || ||||| | Sbjct 39580 CATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTAG 39521 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 39520 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 39461 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || | || || | ||| |||| |||||||| Sbjct 39460 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTTTCGGATTACAA 39401 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||| ||| | || | || ||||| |||| ||||| Sbjct 39400 CATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGG 39353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917100681280