Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq92 114 1e-20 seq25 98.7 9e-16 seq1 87.8 2e-12 >seq92 Length=114681 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || ||||| | ||| || || | || || ||||| Sbjct 39377 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATCCTCGAGCTGC 39436 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || || ||||||||||| | ||| | || ||| |||||| ||| || Sbjct 39437 TTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 39496 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || ||||| |||||||| || | |||||| | || ||||| Sbjct 39497 GACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTACCCGTG 39556 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || ||||| ||||| Sbjct 39557 AGGGTTTTGACGAAGATCTGCAT 39579 >seq25 Length=549874 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || |||||| || ||||| |||| || Sbjct 482460 CACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCCGTCCTC 482519 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||||| || | || || || ||| Sbjct 482520 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTG 482579 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| || | ||| | | | || ||| |||||||| |||| ||||| | | Sbjct 482580 GATCTTCGACTTTA-CGTTGTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGTCT 482638 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | || || || || || |||||||| |||||||| ||| Sbjct 482639 TACCGGTGAGAGTCTTGACAAAGATCTGCATCTTGACG 482676 >seq1 Length=1779776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 ||||| || || || |||| ||||| || |||| || ||||| ||||| || || ||| Sbjct 1522658 TTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATA 1522599 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGAT-TTTCTGTTT-GAGCGTCG 39214 |||||||||||||| | || | || ||| |||||| ||| || || ||| | |||| Sbjct 1522598 AGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGTCG 1522539 Query 39215 CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 | ||| || ||||| || || | ||| || | || ||||| || || || || | Sbjct 1522538 --ATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGA 1522481 Query 39275 AGATTTGCA 39283 |||| |||| Sbjct 1522480 AGATCTGCA 1522472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544348814207