Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 3e-13 seq92 87.8 1e-12 seq25 82.4 5e-11 >seq1 Length=1779776 Score = 89.7 bits (98), Expect = 3e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||| ||||| || ||||||||||| || || || || ||||| || || ||| ||| Sbjct 1522472 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACGCTCGAGGTCGAGTCCTCGG 1522531 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 |||| | || | ||||| || || ||||| || || | || || || || | Sbjct 1522532 ACACGATCGACAATGTAAAAAGCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGC 1522591 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 ||||| | || || || ||||| || || || |||| || || | ||| ||||||| Sbjct 1522592 AGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACACTCTCCGACTACAACA 1522651 Query 23792 TACAAAA 23798 | ||||| Sbjct 1522652 TCCAAAA 1522658 >seq92 Length=114681 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||||||||| || || ||||| ||||| || || || | Sbjct 39579 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTAGC 39520 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 39519 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 39461 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||||| | || ||||||||||| || || || || | || | |||| | |||||| Sbjct 39460 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTTTCG--GATTAC 39403 Query 23788 AACATACAAAAAGAG 23802 ||||| || || ||| Sbjct 39402 AACATCCAGAAGGAG 39388 >seq25 Length=549874 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || || ||||| || || |||||||| | || || || || Sbjct 482672 AAGATGCAGATCTTTGTCAAGACTCTCACCGGTAAGACGATCACCTTGGAGGTGGAGTCT 482613 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || || || || ||||| | || || || Sbjct 482612 TCCGACACAATCGACAACGTAAAGTCGAAGATCCAGGATAAGGAAGGCATTCCTCCCGAC 482553 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || |||||||| || || || |||| || || | |||||||| Sbjct 482552 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCAGCGATTAC 482493 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 482492 AACATCCAGAAGGAGTCTAC 482473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008615441412