Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01]
239 sequences; 44,257,831 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq13 370 1e-97
seq37 86.0 9e-12
>seq13
Length=863668
Score = 370 bits (410), Expect = 1e-97
Identities = 1225/1880 (65%), Gaps = 51/1880 (3%)
Strand=Plus/Minus
Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841
||||| ||||| || || |||| | ||| || || |||||||| || || || |||
Sbjct 289318 GTAAATTGAATAGGTTGAGCAGCGGCCTGTGTTCGGAGGTAGTACATGCCGGTCTTCAGA 289259
Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901
|| || |||| || ||| ||||||||||| | |||| |||| || ||
Sbjct 289258 CCGAGTTTCCACCCAGCGAAGTGCATGCTTGTGATTTTGCCCATGGTAGGCTCTCTCATG 289199
Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961
|| ||||| | |||||| ||||| || || || || | |||||| ||||||| | |
Sbjct 289198 TGGATATTGAGAGACTGAGACTGATCAATAAATGCACCACGATCAGCAGCCATTTGGACA 289139
Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021
| || || | ||| ||||| | |||||| | | | |||| ||| || |
Sbjct 289138 ACTGTGCGCTGGGAAATCTCCCAGACGGTTTTGTATAGTGCCTTGACCTCAGTGGGTATA 289079
Query 77022 TTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078
| | |||| || |||||||| || | ||||| |||||| |||| ||| |
Sbjct 289078 CTAGGAATATTCTGGATGGAACCGTTTTCGGCAATAATACGATTCTTCATATTGTCAGAC 289019
Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138
|||| | | || || | | | || || ||||| || | || || || ||
Sbjct 289018 CACAGTCCCAAATCCACTAGATCCTTGAGTAGCCAGGGATTGACGACCTGGAACTCGCCT 288959
Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198
| ||| || | ||||| |||||| || || || ||||| | | || ||||| |||
Sbjct 288958 GCCAAGACGCGACGAGAGTAAATGTTTGAAGTGTAAGGTTCAAAGCACTCGTTGTTACCC 288899
Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258
|| || || | || ||||||||||||||| |||| | | |||||| | | ||||
Sbjct 288898 AAGATCTGCGAGGTGCTAGCAGTTGGCATAGGAGCCATGAGAAGACTATTGCGTACACCA 288839
Query 77259 TG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATC 77317
|| || | |||| | ||||| ||| ||| ||||||||||| || || ||||||
Sbjct 288838 TGCTGCT-TGATCTGCTCTTTGAGAGCAGCCCAGTCCCAAAGATCAGAGGGGGTAACATC 288780
Query 77318 CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGG 77377
||| | |||||| || || || || | | || ||| || | || || |||||
Sbjct 288779 CCACATATCGTACTGGAGGATGCCTTGGGAAACAGGTGAACCCTCGTAAGTAGAATAAGT 288720
Query 77378 TCCTTCTGTTTCAGCTAGTTCACAACTC--GCTTCCAATGCTCCGTAATAAATTGTTTCG 77435
|| || || ||| | || | | | || ||| || ||| || || || |||
Sbjct 288719 ACCCTCCACTTTAGCAA--TCTCCATTGATGCAGTCAAAGCAGCGTGGTACATAGTCTCG 288662
Query 77436 AAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATA 77495
|| |||| ||| ||||| | | || || ||||| || ||| | | |
Sbjct 288661 AAGATCTGCTTGTTGAGCTGCCGAGCCTCTGGTGATTCAAAAGGC--ATGCGGAGGGCGA 288604
Query 77496 --AAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAA 77553
|||| ||| || | || || || |||| ||||||||||| || | | |||||
Sbjct 288603 GGAAGGTATCGGCCAGACCTTGGACACCAAGACCAATAGGTCGGTGACGCATATTGC--- 288547
Query 77554 TTTTA---GCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAA 77610
| ||| || || || ||| |||| || ||| || | || || ||||| | |
Sbjct 288546 TGTTACGTGCCTCAATAACAGGGTAATGGTTTGCGTCGATGACCTTGTTCAGATTGCGGA 288487
Query 77611 CAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCT-TCCATCT-ATAACAAA 77668
|||| |||| | || || | ||| || | || | | | || || | | |||| |
Sbjct 288486 CAACAACTTGAGTAACCTCATGTAGCTTTTGGAAGTTATAGCTCTCTGTGTGATAATCCA 288427
Query 77669 C--ATGTT--CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCAT 77724
| ||| | || || ||||||||||| || ||||| || || |||| | | | ||
Sbjct 288426 CGAATGATGGCAGGGCCATAGATGCTAGGTTGCAAACAGCAACTTCATCTGGGGCTGAAT 288367
Query 77725 ATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGC 77784
| | || |||||||| || ||||| | ||| ||||| | ||| | |||||||
Sbjct 288366 ACTCGATGATCTCGGTGCAGAGATTGGAGCTGCGGATTGTGCCTAAATTCTTCTGGTTGC 288307
Query 77785 TCTTTTTATTG-CATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGAT 77843
|||| |||| ||||| ||||| || || || || || | |||||||| |||| | |
Sbjct 288306 TCTTGCGATTGGCATGA-TCCTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGTCTGAGCT 288248
Query 77844 TCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCGCCTCTCTCT 77902
|||| || | | ||||| | ||| ||| |||||| | | || | |||
Sbjct 288247 TCGAGGATGGCATACCAGA-GCTTCTGAGCCTTTATCTTCTGGCGGCCGCGACCCTCAGC 288189
Query 77903 TTCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGG 77960
||||| || ||| | |||| ||||| ||||| || | |||||| | | || |||
Sbjct 288188 CTCATACGTTTCGTAGAGAGCC--TCAAACTCATCACCGTAGACATCAGCAAGGCCGGGG 288131
Query 77961 CATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGA 78020
|| ||||| |||||||||| | ||| || || | | | || || ||||| ||||||
Sbjct 288130 CACTCATTCGGGCACATCAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGA 288071
Query 78021 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTC 78080
||||| ||||| || || | || || || || | | | ||| || || || ||||
Sbjct 288070 TCAGGGATCCAAAGGGCCAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCCCATGATTC 288011
Query 78081 TTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATA 78140
||| ||||| || ||||| | | ||| || ||||||||||| ||||| || || |
Sbjct 288010 TTTCGCAGATCTAGGAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGATGGCGAAG 287951
Query 78141 ACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTC 78200
| ||||| || || ||||| || ||||| | || | || |||||||| | || | |
Sbjct 287950 GCGCCAGGCCGCTTGTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGACACGC 287891
Query 78201 AACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCG 78260
| ||| |||| ||||||||||||||| || || ||||||| || ||| || | ||
Sbjct 287890 AGCATGGGAACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCA 287831
Query 78261 CGAAT---ATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA 78317
|| || | | | || | || || ||||| |||||||| || || | ||| ||
Sbjct 287830 CGGATGCGGTGAACATTG---AGGCCAATGCCTCCAGCCATCTTTGAAATCATAGCACAT 287774
Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377
||||| ||||| || || ||||| || || || ||| |||||| | | |||||
Sbjct 287773 GTCTTCAAGGTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAACAA 287714
Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437
||||| || | || ||||| ||||| || | ||||||||| ||||| || ||
Sbjct 287713 GACGACATCTGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTGAAG 287654
Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC----CCATTGATG 78493
|||| || | || ||||| || || | | || ||||| || ||||
Sbjct 287653 AATTTAAGGGACATGAGGTTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCCCCAGATG 287594
Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553
|| ||||| || ||||| | ||| ||||||||||| ||||| |||| || ||
Sbjct 287593 ----CCGACCGCCACGCGCATGATCATGTGCTGAGGTCTCTCAACAATCTTGCCGTTGAT 287538
Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 78611
||| | | ||| || ||||| || || || |||||||| | ||| ||||| ||
Sbjct 287537 TTTGAGAAGGTAGGACCGCTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGAAA--TCG 287480
Query 78612 CTCTCGTAAATAATAACAGA 78631
| ||||| | ||| ||||
Sbjct 287479 CGGTCGTATACAATGGCAGA 287460
>seq37
Length=418716
Score = 86.0 bits (94), Expect = 9e-12
Identities = 195/293 (67%), Gaps = 3/293 (1%)
Strand=Plus/Minus
Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461
||||| | ||| || || || | |||| || | || |||||||| || || ||
Sbjct 51244 TCTTTGATGTAGGTGTCAATAAGAAGAGAGTATGTCTCAGAGTGAATGTTCTCCATCATG 51185
Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521
||||| || |||||||| || | || || | |||||| ||||| || ||| || ||
Sbjct 51184 ATCTGGAAGCCGTAAAAGCACCGAGCCTCGGGGATCTGAACCTCGCCACTAAAACGCTCC 51125
Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581
| | ||||| || || || |||||| || ||||| || || | | || |||
Sbjct 51124 ACAAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATA 51065
Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 48638
|||||||| || | | | | | || |||||||| | ||||| || || | ||
Sbjct 51064 AAATATTTCTCATCCTCATTGATTCGGTTGTTCCAGTCGTGCATATCCTTGGAGAGGTCA 51005
Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
| || ||||| ||||| || || || || || || || ||||| | ||| ||
Sbjct 51004 ATCTCCTCAGCAGTCCAGAAGGAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 50952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694666724676960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |