Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq92 172 1e-37 seq25 170 4e-37 seq1 149 1e-30 >seq92 Length=114681 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | ||||| || || ||||||||||| || | Sbjct 39352 ACCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGA 39411 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || ||||||||||||| || || |||||| || Sbjct 39412 AAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGG 39471 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| || || || Sbjct 39472 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCAC 39531 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||||||||| | || || ||||| |||||||| Sbjct 39532 CTCGAGGGTGATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 39579 >seq25 Length=549874 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || ||||| | || ||||| || |||||||||||| Sbjct 481694 CCGCCACGAAGACGAAGGACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTC 481753 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || |||||||| | |||||||||||| || Sbjct 481754 AGAGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGG 481813 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||| ||||| || || | ||||| || || || | ||| || Sbjct 481814 ATACCCTCCTTGTCCTGGATC-TTGCTCTTCACATTGTCGATGGTATCTGACGATTCCAC 481872 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 481873 TTCCAGGGTGATCGTCTTCCCTGTCAATGTCTTCACGAAGATTTGCAT 481920 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| ||| || || || || || || || ||||| || |||||||| Sbjct 481921 ACCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCT 481980 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| || |||||||| || || || || |||||||| | |||||| ||||| || Sbjct 481981 TAGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGG 482040 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||| ||||| |||||| || || | ||||| || || |||| ||| | Sbjct 482041 GATACCCTCCTTGTCCTGGAT-TTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCA 482099 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || |||||||| ||||| || || | ||||| || ||||| ||||| Sbjct 482100 CCTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCAT 482148 Score = 147 bits (162), Expect = 5e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | || || || ||||||||||| || Sbjct 482442 ACCGCCACGAAGACGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCT 482501 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || ||||| ||||||| ||| || ||||| || Sbjct 482502 GAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 482561 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || |||||||| | |||||| | ||||| ||||| |||| || || Sbjct 482562 AATGCCTTCCTTATCCTGGATCTTCGACTTTACGTTGTCGATTGTGTCGGAAGACTCCAC 482621 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | |||||||||||||| || | |||||| || || |||||||| || Sbjct 482622 CTCCAAGGTGATCGTCTTACCGGTGAGAGTCTTGACAAAGATCTGCATCTT 482672 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || || || | ||| ||| || || ||||||||||| Sbjct 482150 CCACCACGAAGACGGAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTC 482209 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || ||||| |||| || || ||||| ||| Sbjct 482210 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGGA 482269 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || |||||||| | |||||| | ||||| ||||| || | || || Sbjct 482270 ATGCCTTCTTTATCCTGGATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACTCAACC 482329 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| || |||||||| |||||||| || || |||| Sbjct 482330 TCGAGCGTAATCGTCTTTCCCGTCAAGGTTTTGACGA 482366 >seq1 Length=1779776 Score = 149 bits (164), Expect = 1e-30 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| | || || ||||| ||||| || || || || || ||||| Sbjct 1522658 TTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATA 1522599 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| || |||||| || || ||||||||||| |||||||| |||||| | ||| Sbjct 1522598 AGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGTCG 1522539 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||||||| | ||||| ||||| || || ||||| ||||| | ||||| ||||| Sbjct 1522538 ATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAG 1522479 Query 283092 ATCTGCA 283098 ||||||| Sbjct 1522478 ATCTGCA 1522472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735994688306