Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq92 147 2e-30 seq25 140 2e-28 seq1 136 3e-27 >seq92 Length=114681 Score = 147 bits (162), Expect = 2e-30 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| || ||||||||||| |||||||||||||| | Sbjct 39353 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAA 39412 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || || |||||||| ||||||||||||| |||||||| || | || Sbjct 39413 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 39472 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | ||||||||| || |||| Sbjct 39473 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGCTAGACTCCA 39530 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| | || || ||||| ||||||||||| || |||||||| |||||||| Sbjct 39531 CCTCGAGGGTGATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATGAT 39582 >seq25 Length=549874 Score = 140 bits (154), Expect = 2e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || || || |||||| ||||||||||||||| ||| || |||| || Sbjct 482460 CACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCCGTCCTC 482519 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||||||| || | ||| | |||||||| ||| Sbjct 482520 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTG 482579 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | || ||||||| || |||||||||| || |||||||| Sbjct 482580 GATCTTCGACTTTACGTTGTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGTCTT 482639 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || ||||| ||||| Sbjct 482640 ACCGGTGAGAGTCTTGACAAAGATCTGCAT 482669 Score = 118 bits (130), Expect = 8e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||| || ||||| ||| || || | || ||||||||||| || ||||| Sbjct 481957 CTCCTTTTGAATATTGTAGTCGCTTAGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAA 482016 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | ||| ||||| || | ||| | ||| ||||| ||| || || ||||| | Sbjct 482017 GATGAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATTTTGCTCTTCACATT 482076 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| || | ||||||||||||| || || |||||||| ||||| |||||||| Sbjct 482077 GTCGATGGTATCTGAAGATTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCAC 482136 Query 44326 GAAGATTTGCATG 44338 || ||||||||| Sbjct 482137 AAATATTTGCATG 482149 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| ||||| || |||||||| ||| || || |||| || Sbjct 482167 CACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCGTCCTC 482226 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||| |||| |||||||| || | ||| | ||||| || ||| Sbjct 482227 GAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTG 482286 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | || ||||||| || || ||||| | |||||||||||| Sbjct 482287 GATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACTCAACCTCGAGCGTAATCGTCTT 482346 Query 44308 TCCCGTGAGGGTCTTCACGA 44327 |||||| | ||| || |||| Sbjct 482347 TCCCGTCAAGGTTTTGACGA 482366 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || || |||||||| || || |||| | || ||||||||||| || ||||| Sbjct 481729 CTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCCTCCAGCTGCTTACCAGCAAA 481788 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | ||| || || || | || | ||| ||||| ||| ||||| ||||| | Sbjct 481789 GATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACATT 481848 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| || | |||||||| |||| || |||||||| || || | |||||||| Sbjct 481849 GTCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGTCTTCCCTGTCAATGTCTTCAC 481908 Query 44326 GAAGATTTGCAT 44337 |||||||||||| Sbjct 481909 GAAGATTTGCAT 481920 >seq1 Length=1779776 Score = 136 bits (150), Expect = 3e-27 Identities = 147/191 (77%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||||||||||||||| |||| |||| || |||| || |||||||| || || |||| Sbjct 1522660 CCTTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 1522601 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT-CTGCTT-CAATGT 44265 | | ||||||||| || | ||| | || ||||| ||| ||||| || || || ||| Sbjct 1522600 TAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGT 1522541 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | |||||| ||||| |||||||||||||| || Sbjct 1522540 --CGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGAC 1522483 Query 44326 GAAGATTTGCA 44336 |||||| |||| Sbjct 1522482 GAAGATCTGCA 1522472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989351415463