Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25 149 2e-30 seq92 143 6e-29 seq1 140 8e-28 >seq25 Length=549874 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| ||||| || ||||| || ||||||||| ||||| Sbjct 482145 CAAATATTTGTGAAGACGCTCACTGGAAAGACCATCACTCTGGAGGTGGAATCTTCAGAT 482086 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || || || |||||||| || || |||||||||||||||||| Sbjct 482085 ACCATCGACAATGTGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAA 482026 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || |||||| | || || ||| || || | Sbjct 482025 CGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGACGTACGCTAAGCGACTACAATATT 481966 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || ||| |||| || ||| Sbjct 481965 CAAAAGGAGTCGACATTGCACCTAGTT 481939 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || | ||||| || ||||||||||| || |||||| ||||| Sbjct 481917 CAAATCTTCGTGAAGACATTGACAGGGAAGACGATCACCCTGGAAGTGGAATCGTCAGAT 481858 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || ||||| |||||||| ||| Sbjct 481857 ACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAA 481798 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | ||||| || || ||| | Sbjct 481797 CGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACTCTGAGTGACTACAACATT 481738 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || |||||||| || Sbjct 481737 CAGAAAGAGTCGACCCTGCATCTAGT 481712 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| || || ||||||||| | |||||||| || ||| Sbjct 482666 CAGATCTTTGTCAAGACTCTCACCGGTAAGACGATCACCTTGGAGGTGGAGTCTTCCGAC 482607 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| ||||| || ||||| || ||||| |||||||| Sbjct 482606 ACAATCGACAACGTAAAGTCGAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAGCAG 482547 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || |||||| ||| || Sbjct 482546 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCAGCGATTACAACATC 482487 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 482486 CAGAAGGAGTCTACCCTCCATCTCGT 482461 >seq92 Length=114681 Score = 143 bits (158), Expect = 6e-29 Identities = 147/191 (77%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| ||||| ||||| || || || ||||||||||||||||| ||| Sbjct 39576 CAGATCTTCGTCAAAACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTAGC--- 39520 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || ||||| ||||| |||||||| || || ||||| || |||||| Sbjct 39519 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 39460 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| ||||| || |||||||| ||||| | || ||| | ||||| ||| Sbjct 39459 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTTTCGGATTACAAC 39400 Query 178101 GTCCAAAAAGA 178111 |||| || || Sbjct 39399 ATCCAGAAGGA 39389 >seq1 Length=1779776 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || || || |||||||| || ||| ||| Sbjct 1522474 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACGCTCGAGGTCGAGTCCTCGGAC 1522533 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||| |||||||| || || |||||||| |||||||| Sbjct 1522534 ACGATCGACAATGTAAAAAGCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 1522593 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || |||||||| || || |||| || |||| || ||| || Sbjct 1522594 CGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACACTCTCCGACTACAACATC 1522653 Query 178104 CAAAA 178108 ||||| Sbjct 1522654 CAAAA 1522658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727513949366