Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq92 167 2e-36 seq25 154 1e-32 seq1 118 1e-21 >seq92 Length=114681 Score = 167 bits (184), Expect = 2e-36 Identities = 176/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || |||||||||||||| ||||| || || || Sbjct 39353 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAA 39412 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||||||||||||||| || ||||||||||| ||||| | ||| Sbjct 39413 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 39472 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||||| ||||||| Sbjct 39473 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGCTAGACTCCA 39530 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || |||||||| || || || ||||| ||||||||| Sbjct 39531 CCTCGAGGGTGATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 39580 >seq25 Length=549874 Score = 154 bits (170), Expect = 1e-32 Identities = 178/237 (75%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||| ||||| || || ||||||||| ||||| || ||| | Sbjct 482443 CCGCCACGAAGACGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 482502 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 482503 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 482562 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||| ||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 482563 ATGCCTTCCTTATCCTGGATCTTCGACTT-TACGTTGTCGATTGTGTCGGAAGACTCCAC 482621 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGAT 41871 ||||| || ||||| ||||| || || ||||| || || |||||||| || |||| Sbjct 482622 CTCCAAGGTGATCGTCTTACCGGTGAGAGTCTTGACAAAGATCTGCATCTTGACGAT 482678 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||| || || || ||| |||||||||||||| |||||| Sbjct 482149 GCCACCACGAAGACGGAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCT 482208 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| |||||||||||||| || || ||||||||||| ||||| | || Sbjct 482209 CAGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGG 482268 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || || || ||| ||| || ||| ||| | | | |||||| ||||| | Sbjct 482269 AATGCCTTCTTTATCCTGGATCTTCGACTT-TACGTTGTCGATCGTGTCGGATGACTCAA 482327 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||| | ||| ||||| || ||||||| || || |||| Sbjct 482328 CCTCGAGCGTAATCGTCTTTCCCGTCAAGGTTTTGACGA 482366 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || |||||||| || ||| ||||||||||| ||||| Sbjct 481694 CCGCCACGAAGACGAAGGACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTC 481753 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| | || || |||||||| || || || || || || |||||||||| ||| Sbjct 481754 AGAGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGG 481813 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||| || | | | || || ||| ||||| Sbjct 481814 ATACCCTCCTTGTCCTGGATCTTGCTCTTC-ACATTGTCGATGGTATCTGACGATTCCAC 481872 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || || |||| ||||| ||||| || ||||| Sbjct 481873 TTCCAGGGTGATCGTCTTCCCTGTCAATGTCTTCACGAAGATTTGCAT 481920 >seq1 Length=1779776 Score = 118 bits (130), Expect = 1e-21 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || ||||| ||||||||||| || || |||| |||||||||||||| ||||| | Sbjct 1522660 CCTTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 1522601 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT--TTGCTTCAACGA 41790 | || ||||| ||||| | || | || |||||||||| ||| || || | || | Sbjct 1522600 TAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGT 1522541 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | ||| || || || ||||| || ||||| || Sbjct 1522540 CG--ATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGAC 1522483 Query 41851 GAAAATCTGCA 41861 ||| ||||||| Sbjct 1522482 GAAGATCTGCA 1522472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302618866800