Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq4745 109 1e-18
seq4948 86.0 1e-11
>seq4745
Length=15183
Score = 109 bits (120), Expect = 1e-18
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 230428 GACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487
|| ||| |||||||| || ||||||||||| | || | ||| || ||||| ||
Sbjct 8887 GAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATTTGATGAAGCAATACATTGAG 8828
Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547
||||| || ||||| || ||||||| |||||| | ||||| || ||| || ||
Sbjct 8827 TTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGAGAAGGTTTACCGATCAGCCAAT 8768
Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607
|| || | || ||||| |||||| || ||| ||||||||||||||||| |||||
Sbjct 8767 CCATTCGACTTCATGGAAAACATTTCTCTCGCAGGCAAGACCAACTTCTTCGAGAAGCGA 8708
Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
|| | ||||| || | ||||||| |||
Sbjct 8707 GTTGGCGACTACCAAAAAGCTGGTGTTATG 8678
>seq4948
Length=26094
Score = 86.0 bits (94), Expect = 1e-11
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 319450 GGTTCGTAATGGATA-ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACAC 319508
|| |||||||| ||| ||| ||| || || |||| | ||| || |||||||| || ||
Sbjct 7395 GGCTCGTAATG-ATAGATATCGGTACAGACTTCGTCCAAGAAACCAGAGTCGTGAGAAAC 7337
Query 319509 AATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGA 319568
||||| | | || || || | | | || ||||| ||||||| | ||||| |
Sbjct 7336 AATCAAACTAGTAATCTCGGTATGAGTCTTGAGATATTCTTGCAACCACTTAACGTTGGC 7277
Query 319569 CACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGC 319628
||| | ||| ||||| || ||||||||||| || | | || |||| | ||| ||
Sbjct 7276 AACATCCAAATGATTGGTAGGTTCGTCAAGAAGGAGGACATCAGCCTTCATCAACATAGC 7217
Query 319629 ACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667
| || | ||| || ||||||||||| || ||||| ||
Sbjct 7216 TCTGGCCAAAGCAAGCTTCATTTTCCATCCACCGGAGAG 7178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057724450497350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |