Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4745 109 1e-18 seq4948 86.0 1e-11 >seq4745 Length=15183 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 230428 GACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487 || ||| |||||||| || ||||||||||| | || | ||| || ||||| || Sbjct 8887 GAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATTTGATGAAGCAATACATTGAG 8828 Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547 ||||| || ||||| || ||||||| |||||| | ||||| || ||| || || Sbjct 8827 TTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGAGAAGGTTTACCGATCAGCCAAT 8768 Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607 || || | || ||||| |||||| || ||| ||||||||||||||||| ||||| Sbjct 8767 CCATTCGACTTCATGGAAAACATTTCTCTCGCAGGCAAGACCAACTTCTTCGAGAAGCGA 8708 Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || | ||||| || | ||||||| ||| Sbjct 8707 GTTGGCGACTACCAAAAAGCTGGTGTTATG 8678 >seq4948 Length=26094 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 319450 GGTTCGTAATGGATA-ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACAC 319508 || |||||||| ||| ||| ||| || || |||| | ||| || |||||||| || || Sbjct 7395 GGCTCGTAATG-ATAGATATCGGTACAGACTTCGTCCAAGAAACCAGAGTCGTGAGAAAC 7337 Query 319509 AATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGA 319568 ||||| | | || || || | | | || ||||| ||||||| | ||||| | Sbjct 7336 AATCAAACTAGTAATCTCGGTATGAGTCTTGAGATATTCTTGCAACCACTTAACGTTGGC 7277 Query 319569 CACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGC 319628 ||| | ||| ||||| || ||||||||||| || | | || |||| | ||| || Sbjct 7276 AACATCCAAATGATTGGTAGGTTCGTCAAGAAGGAGGACATCAGCCTTCATCAACATAGC 7217 Query 319629 ACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | || | ||| || ||||||||||| || ||||| || Sbjct 7216 TCTGGCCAAAGCAAGCTTCATTTTCCATCCACCGGAGAG 7178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057724450497350