Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 315 8e-81
seq4745 131 2e-25
>seq4887
Length=16554
Score = 315 bits (348), Expect = 8e-81
Identities = 1320/2066 (64%), Gaps = 51/2066 (2%)
Strand=Plus/Minus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
||||||||||| || ||||| || | | ||||| |||||||||||||| || || |||
Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| | ||||||| ||||||||| || | ||| | || || ||
Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 11884
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
||||| ||||| |||||| |||||||||||| || || | |||||| ||||| | |
Sbjct 11883 TGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACA 11824
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047
|| | ||| | |||||||||| ||| || || | ||| | || |||| | |
Sbjct 11823 ATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATG 11764
Query 53048 TTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104
|| | | || |||||||||||||| || | || || | ||||| || | ||| |
Sbjct 11763 TTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 11704
Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164
|| | | | ||| ||| | | || || || || || ||||| || |||||
Sbjct 11703 CAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCG 11644
Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224
| || || | || | || || || || || || || | | | || || ||
Sbjct 11643 GCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCG 11584
Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284
| |||||||| || ||||| |||||||| || || | ||||| || | || |||
Sbjct 11583 AGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACC- 11525
Query 53285 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 53342
||||| |||| | || || ||||||| ||| ||||| | || |||
Sbjct 11524 -ATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACAC 11466
Query 53343 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 53398
||| || ||| || ||||| | || || | || || ||
Sbjct 11465 CCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAAC----CTTCGTAGGTCTCA 11410
Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458
||||| || || || || | | | | || || ||||||| || |||||
Sbjct 11409 TATGGGCCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTC 11350
Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 53518
||||| |||| | || |||| || || || | ||| ||||| || | |||
Sbjct 11349 TCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGC 11291
Query 53519 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577
| || || || || | || |||||||||| | | ||||||| || | |||
Sbjct 11290 CAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACT 11231
Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGAC 53637
|| ||||||||| | |||||| || || || || ||||| || || | |||||||||
Sbjct 11230 CTTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGAC 11171
Query 53638 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC-----TATT-AC 53691
|| |||| || || || | || || | |||||| | ||| || | || ||
Sbjct 11170 AACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGAC 11111
Query 53692 AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 53751
||| | | |||||||| |||| ||||| || ||||||| | | | ||
Sbjct 11110 AAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTA 11051
Query 53752 TTGTATTATCTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATT 53808
|| | || || ||||| | || |||| ||| || || | || | ||| ||
Sbjct 11050 TTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTTCTTTTGGTT 10994
Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868
|||||||||||| || ||||| || ||||| ||||| || | ||||| ||| ||||||
Sbjct 10993 ACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGC 10934
Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT--TTCT 53926
|| | || | | ||| | ||||||| || | || | || | || |
Sbjct 10933 CTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTC--TTACGACCTTTACCTTGT 10876
Query 53927 CTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986
|| ||||| | ||| | || || || || || | |||| |||| || |||
Sbjct 10875 CTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGA 10816
Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046
||||| | || ||||| | | ||| ||||||| | | || || ||||| ||||||
Sbjct 10815 CATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 10756
Query 54047 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105
|| |||||||| || || ||| || ||||| | | |||| |||||| || || ||
Sbjct 10755 TCTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTT 10697
Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165
|||| || || | |||| | | | ||| | |||||| ||||| | ||| | || |
Sbjct 10696 CTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAA 10637
Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225
| ||||| || ||||| || || || || | |||||||||||||| || ||||||
Sbjct 10636 TGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCG 10577
Query 54226 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 54285
| ||| |||| ||||| || || ||| || || || | || ||| ||| | ||
Sbjct 10576 AAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGC 10517
Query 54286 ACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCG 54345
||| || | || ||||| || || || || | || || || | || ||
Sbjct 10516 ACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAAT 10457
Query 54346 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405
|| || ||||||||||| || || |||||||| ||| |||| | || || || ||
Sbjct 10456 CTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGA 10397
Query 54406 AGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461
|| | | ||| | || ||| |||||| || | || ||||||||||| ||||
Sbjct 10396 TGAAA---GCTGA-GCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAA 10341
Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGA 54520
| |||| | || | | ||||| || ||||| || || ||||| || | |||
Sbjct 10340 AGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGA 10282
Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580
|| || || || |||||||| | ||| || || || | |||| | | || || |
Sbjct 10281 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGA 10222
Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 54640
|| | ||| ||| || | ||| || || || || || | ||| ||||||||
Sbjct 10221 CGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTG 10162
Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATGGTAA 54698
|| |||| || | |||||||||| ||| || | | |||| |||| | ||| |
Sbjct 10161 TCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT-- 10105
Query 54699 TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCC 54757
| |||| ||| || ||||| | | |||||||| ||||| |||| ||| ||
Sbjct 10104 TCCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCG 10045
Query 54758 TTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 54817
| || || | ||| | || || |||| |||||| ||||| || || || || | |
Sbjct 10044 CTAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGA 9985
Query 54818 GCGGCTAGAATGGCATAATCCGGATG 54843
|| |||||||||||||| || |||||
Sbjct 9984 GCAGCTAGAATGGCATAGTCGGGATG 9959
>seq4745
Length=15183
Score = 131 bits (144), Expect = 2e-25
Identities = 302/451 (67%), Gaps = 8/451 (2%)
Strand=Plus/Plus
Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890
|||||| || ||||||||| || || || || || ||||| || || || || ||| |
Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737
Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGT--AACATTATAGATTCTTTTAAAT 23948
| || || ||||||||||| ||| ||||||||| | | || | |||| | |
Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATTA-- 8795
Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008
|| | || || | | |||||||| ||||| || ||| ||||||| || |
Sbjct 8796 CCAAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAG 8855
Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068
||||| || | || | ||||||||| | || | |||||||| ||||| |||
Sbjct 8856 TTCATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACA 8915
Query 24069 GCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA 24126
|| ||||| |||| | || | || | || || || || ||| | || || |
Sbjct 8916 GCCTCTGTAATAACA--TCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGA 8973
Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186
| | || || ||||| ||| || ||||||||||| | || | ||||||||||
Sbjct 8974 AGAGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAA 9033
Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246
| ||||| || | ||| | ||||||||| || ||||| || || || || || || |||
Sbjct 9034 AGGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCAC 9093
Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277
||||| || ||||| || || || || ||
Sbjct 9094 TGAAGAAGATACCTTCAACGGCAGCGAATGC 9124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593667088935600
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