Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4887 315 8e-81 seq4745 131 2e-25 >seq4887 Length=16554 Score = 315 bits (348), Expect = 8e-81 Identities = 1320/2066 (64%), Gaps = 51/2066 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| || ||||| || | | ||||| |||||||||||||| || || ||| Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | ||||||| ||||||||| || | ||| | || || || Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 11884 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| ||||| |||||| |||||||||||| || || | |||||| ||||| | | Sbjct 11883 TGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACA 11824 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || | ||| | |||||||||| ||| || || | ||| | || |||| | | Sbjct 11823 ATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATG 11764 Query 53048 TTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | | || |||||||||||||| || | || || | ||||| || | ||| | Sbjct 11763 TTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 11704 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | | ||| ||| | | || || || || || ||||| || ||||| Sbjct 11703 CAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCG 11644 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | || || | || | || || || || || || || | | | || || || Sbjct 11643 GCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCG 11584 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | |||||||| || ||||| |||||||| || || | ||||| || | || ||| Sbjct 11583 AGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACC- 11525 Query 53285 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 53342 ||||| |||| | || || ||||||| ||| ||||| | || ||| Sbjct 11524 -ATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACAC 11466 Query 53343 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 53398 ||| || ||| || ||||| | || || | || || || Sbjct 11465 CCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAAC----CTTCGTAGGTCTCA 11410 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 ||||| || || || || | | | | || || ||||||| || ||||| Sbjct 11409 TATGGGCCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTC 11350 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 53518 ||||| |||| | || |||| || || || | ||| ||||| || | ||| Sbjct 11349 TCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGC 11291 Query 53519 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 | || || || || | || |||||||||| | | ||||||| || | ||| Sbjct 11290 CAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACT 11231 Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGAC 53637 || ||||||||| | |||||| || || || || ||||| || || | ||||||||| Sbjct 11230 CTTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGAC 11171 Query 53638 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC-----TATT-AC 53691 || |||| || || || | || || | |||||| | ||| || | || || Sbjct 11170 AACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGAC 11111 Query 53692 AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 53751 ||| | | |||||||| |||| ||||| || ||||||| | | | || Sbjct 11110 AAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTA 11051 Query 53752 TTGTATTATCTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 || | || || ||||| | || |||| ||| || || | || | ||| || Sbjct 11050 TTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTTCTTTTGGTT 10994 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 |||||||||||| || ||||| || ||||| ||||| || | ||||| ||| |||||| Sbjct 10993 ACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGC 10934 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT--TTCT 53926 || | || | | ||| | ||||||| || | || | || | || | Sbjct 10933 CTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTC--TTACGACCTTTACCTTGT 10876 Query 53927 CTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986 || ||||| | ||| | || || || || || | |||| |||| || ||| Sbjct 10875 CTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGA 10816 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 ||||| | || ||||| | | ||| ||||||| | | || || ||||| |||||| Sbjct 10815 CATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 10756 Query 54047 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105 || |||||||| || || ||| || ||||| | | |||| |||||| || || || Sbjct 10755 TCTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTT 10697 Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165 |||| || || | |||| | | | ||| | |||||| ||||| | ||| | || | Sbjct 10696 CTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAA 10637 Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225 | ||||| || ||||| || || || || | |||||||||||||| || |||||| Sbjct 10636 TGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCG 10577 Query 54226 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 54285 | ||| |||| ||||| || || ||| || || || | || ||| ||| | || Sbjct 10576 AAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGC 10517 Query 54286 ACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCG 54345 ||| || | || ||||| || || || || | || || || | || || Sbjct 10516 ACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAAT 10457 Query 54346 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 || || ||||||||||| || || |||||||| ||| |||| | || || || || Sbjct 10456 CTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGA 10397 Query 54406 AGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 || | | ||| | || ||| |||||| || | || ||||||||||| |||| Sbjct 10396 TGAAA---GCTGA-GCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAA 10341 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGA 54520 | |||| | || | | ||||| || ||||| || || ||||| || | ||| Sbjct 10340 AGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGA 10282 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || || || || |||||||| | ||| || || || | |||| | | || || | Sbjct 10281 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGA 10222 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 54640 || | ||| ||| || | ||| || || || || || | ||| |||||||| Sbjct 10221 CGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTG 10162 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATGGTAA 54698 || |||| || | |||||||||| ||| || | | |||| |||| | ||| | Sbjct 10161 TCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT-- 10105 Query 54699 TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCC 54757 | |||| ||| || ||||| | | |||||||| ||||| |||| ||| || Sbjct 10104 TCCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCG 10045 Query 54758 TTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 54817 | || || | ||| | || || |||| |||||| ||||| || || || || | | Sbjct 10044 CTAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGA 9985 Query 54818 GCGGCTAGAATGGCATAATCCGGATG 54843 || |||||||||||||| || ||||| Sbjct 9984 GCAGCTAGAATGGCATAGTCGGGATG 9959 >seq4745 Length=15183 Score = 131 bits (144), Expect = 2e-25 Identities = 302/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 |||||| || ||||||||| || || || || || ||||| || || || || ||| | Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGT--AACATTATAGATTCTTTTAAAT 23948 | || || ||||||||||| ||| ||||||||| | | || | |||| | | Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATTA-- 8795 Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 || | || || | | |||||||| ||||| || ||| ||||||| || | Sbjct 8796 CCAAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAG 8855 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| || | || | ||||||||| | || | |||||||| ||||| ||| Sbjct 8856 TTCATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACA 8915 Query 24069 GCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA 24126 || ||||| |||| | || | || | || || || || ||| | || || | Sbjct 8916 GCCTCTGTAATAACA--TCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGA 8973 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | || || ||||| ||| || ||||||||||| | || | |||||||||| Sbjct 8974 AGAGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAA 9033 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | ||||| || | ||| | ||||||||| || ||||| || || || || || || ||| Sbjct 9034 AGGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCAC 9093 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| || ||||| || || || || || Sbjct 9094 TGAAGAAGATACCTTCAACGGCAGCGAATGC 9124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593667088935600