Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4745 129 6e-25
seq5062 111 2e-19
seq894 86.0 6e-12
>seq4745
Length=15183
Score = 129 bits (142), Expect = 6e-25
Identities = 200/285 (70%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| ||||| | || ||
Sbjct 9591 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATTTG 9532
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| ||||| ||||||| | | | || ||| | ||||| | ||||||
Sbjct 9531 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCATCTCT 9472
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || |||||||| ||| || || ||||| || || || ||||| ||
Sbjct 9471 CACGTTCTCGCATTCTTCGCCGCATCCGATGGAATTGTCAATGAAAACCTTGTCGAACGC 9412
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | ||||| || | | || || || ||||||||||| || || ||| |||
Sbjct 9411 TTCAGTGGAGAGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAAATCATGATG 9352
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|| ||| | |||||||||| || ||| |||||||| || |||
Sbjct 9351 GAAAACATCCACTCGGAAACATACTCGCTTCTCATCGATACATAC 9307
Score = 118 bits (130), Expect = 1e-21
Identities = 224/327 (69%), Gaps = 2/327 (1%)
Strand=Plus/Minus
Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097
|| || || || ||||| ||||| || || ||||||| || |||||| | ||
Sbjct 9133 CGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTCGCCTCTATT 9074
Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157
|| ||||||||||| || ||| | ||| | || || || || ||||||||||||||||
Sbjct 9073 TTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAGCTCATCTCC 9014
Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA 117217
| ||||||||||| ||| |||||| ||||| |||| ||| ||| ||| ||| ||
Sbjct 9013 CGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTGCTCTTCTCGCACTTGAAGCATCGC 8954
Query 117218 CCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTC 117277
|| ||| ||| ||| | | || || || ||| || ||||| |||
Sbjct 8953 CCAAGCAAACAAGCCGTTCAGGATGTTATTACAGAGGCTGTCCAGATTGAGCAAGAATTC 8894
Query 117278 CTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATA 117336
| || ||||| || || |||| ||| || || | || | || |||| ||||||
Sbjct 8893 TTGACGGAAGCTCTTCCATGTGC-TCTCCTTGGCATGAACTCGGATTTGATGAAGCAATA 8835
Query 117337 CATCGAGTTCGTCGCCGACAGGCTGCT 117363
||| ||||||||||| ||| | || ||
Sbjct 8834 CATTGAGTTCGTCGCAGACCGTCTTCT 8808
>seq5062
Length=19932
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| |||||||||||| | || ||||| || ||
Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||| || || | || || ||||| ||||| | || ||
Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAA 11185
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| ||||| || || || || | ||||| || ||| ||||||
Sbjct 11184 CAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAAC 11125
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
|||||||||||| | || || || | || |||| || | || || |||
Sbjct 11124 ATCCAGAAGGAGTCGACTCTTCACTTGGTCCTGCGTTTACGTGGAGGTGGC 11074
>seq894
Length=6424
Score = 86.0 bits (94), Expect = 6e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
||| |||| || || ||||| ||||| || ||||| | || || ||| | | || |
Sbjct 3887 ATAGTCGTCAAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACT 3828
Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815
| | | | ||| || |||| || || ||||| |||||| | || || |||||
Sbjct 3827 ATCGACAATGTTAAGACCAAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGT 3768
Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875
| |||| ||| ||||| || || || |||| ||||| || ||||||||||||||||
Sbjct 3767 TTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAG 3708
Query 40876 AAGGA 40880
|||||
Sbjct 3707 AAGGA 3703
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| | || || ||| | |||||| | | |||| |||||
Sbjct 4155 TCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAACG-TCAAG 4097
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | || || ||||| || || | ||||| || || | |||| || |||
Sbjct 4096 ACTAAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAACAGCGTTTGATCTTTGCTGGC 4037
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| || || || || | || || | | |||||||||||||||||||||| | || ||
Sbjct 4036 AAGCAACTCGAGGATGGTCGTACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTC 3977
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 3976 CATCTCGT 3969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515171896437200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |