Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4745 129 6e-25 seq5062 111 2e-19 seq894 86.0 6e-12 >seq4745 Length=15183 Score = 129 bits (142), Expect = 6e-25 Identities = 200/285 (70%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||| | || || Sbjct 9591 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATTTG 9532 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| ||||||| | | | || ||| | ||||| | |||||| Sbjct 9531 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCATCTCT 9472 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| ||| || || ||||| || || || ||||| || Sbjct 9471 CACGTTCTCGCATTCTTCGCCGCATCCGATGGAATTGTCAATGAAAACCTTGTCGAACGC 9412 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| || | | || || || ||||||||||| || || ||| ||| Sbjct 9411 TTCAGTGGAGAGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAAATCATGATG 9352 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 || ||| | |||||||||| || ||| |||||||| || ||| Sbjct 9351 GAAAACATCCACTCGGAAACATACTCGCTTCTCATCGATACATAC 9307 Score = 118 bits (130), Expect = 1e-21 Identities = 224/327 (69%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 || || || || ||||| ||||| || || ||||||| || |||||| | || Sbjct 9133 CGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTCGCCTCTATT 9074 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||||||||||| || ||| | ||| | || || || || |||||||||||||||| Sbjct 9073 TTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAGCTCATCTCC 9014 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA 117217 | ||||||||||| ||| |||||| ||||| |||| ||| ||| ||| ||| || Sbjct 9013 CGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTGCTCTTCTCGCACTTGAAGCATCGC 8954 Query 117218 CCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTC 117277 || ||| ||| ||| | | || || || ||| || ||||| ||| Sbjct 8953 CCAAGCAAACAAGCCGTTCAGGATGTTATTACAGAGGCTGTCCAGATTGAGCAAGAATTC 8894 Query 117278 CTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATA 117336 | || ||||| || || |||| ||| || || | || | || |||| |||||| Sbjct 8893 TTGACGGAAGCTCTTCCATGTGC-TCTCCTTGGCATGAACTCGGATTTGATGAAGCAATA 8835 Query 117337 CATCGAGTTCGTCGCCGACAGGCTGCT 117363 ||| ||||||||||| ||| | || || Sbjct 8834 CATTGAGTTCGTCGCAGACCGTCTTCT 8808 >seq5062 Length=19932 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| |||||||||||| | || ||||| || || Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| || || | || || ||||| ||||| | || || Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAA 11185 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||| || || || || | ||||| || ||| |||||| Sbjct 11184 CAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAAC 11125 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||| | || || || | || |||| || | || || ||| Sbjct 11124 ATCCAGAAGGAGTCGACTCTTCACTTGGTCCTGCGTTTACGTGGAGGTGGC 11074 >seq894 Length=6424 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || ||||| ||||| || ||||| | || || ||| | | || | Sbjct 3887 ATAGTCGTCAAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACT 3828 Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | | | ||| || |||| || || ||||| |||||| | || || ||||| Sbjct 3827 ATCGACAATGTTAAGACCAAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGT 3768 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 | |||| ||| ||||| || || || |||| ||||| || |||||||||||||||| Sbjct 3767 TTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAG 3708 Query 40876 AAGGA 40880 ||||| Sbjct 3707 AAGGA 3703 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| | || || ||| | |||||| | | |||| ||||| Sbjct 4155 TCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAACG-TCAAG 4097 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | || || ||||| || || | ||||| || || | |||| || ||| Sbjct 4096 ACTAAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAACAGCGTTTGATCTTTGCTGGC 4037 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || || || || || | || || | | |||||||||||||||||||||| | || || Sbjct 4036 AAGCAACTCGAGGATGGTCGTACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTC 3977 Query 40891 CATCTAGT 40898 ||||| || Sbjct 3976 CATCTCGT 3969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515171896437200