Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq894 109 8e-19
>seq894
Length=6424
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| || || || || || || ||| | ||| |||| || |
Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || || |||| || |||||||| || ||||| || ||||||||||||
Sbjct 3605 GATACTATCGACAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAA 3546
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | || || || || || || || || |||||| | || || | || || ||
Sbjct 3545 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAAC 3486
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| || || ||||| ||||||||| | || | || ||||| ||
Sbjct 3485 ATTCAAAAGGAGTCGACTTTACATTTGGTTCTTCGCCTTCGTGGTGGAAT 3436
Score = 98.7 bits (108), Expect = 1e-15
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613
||||| || || ||||| ||||| ||| | ||| ||||| | ||||| || |||
Sbjct 3878 AAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACTATCGACAAT 3819
Query 124614 -TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672
|||| || || ||||||||||| || ||||| || |||||||||||| | | || ||
Sbjct 3818 GTTAAGACC-AAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGTTTGATCTT 3760
Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732
|| || || ||| | ||||| | || || | || || || || || || |||||
Sbjct 3759 CGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAATC 3700
Query 124733 AACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| ||||||||| | | | || ||||||||
Sbjct 3699 GACTTTACATTTGGTTCTGAGACTTCGTGGTGGTAT 3664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755386639696000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |