Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq894 109 8e-19 >seq894 Length=6424 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || ||| | ||| |||| || | Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || |||| || |||||||| || ||||| || |||||||||||| Sbjct 3605 GATACTATCGACAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAA 3546 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || || || || |||||| | || || | || || || Sbjct 3545 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAAC 3486 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||||| ||||||||| | || | || ||||| || Sbjct 3485 ATTCAAAAGGAGTCGACTTTACATTTGGTTCTTCGCCTTCGTGGTGGAAT 3436 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| || || ||||| ||||| ||| | ||| ||||| | ||||| || ||| Sbjct 3878 AAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACTATCGACAAT 3819 Query 124614 -TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672 |||| || || ||||||||||| || ||||| || |||||||||||| | | || || Sbjct 3818 GTTAAGACC-AAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGTTTGATCTT 3760 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732 || || || ||| | ||||| | || || | || || || || || || ||||| Sbjct 3759 CGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAATC 3700 Query 124733 AACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||||||| | | | || |||||||| Sbjct 3699 GACTTTACATTTGGTTCTGAGACTTCGTGGTGGTAT 3664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755386639696000