Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq894 116 3e-21 >seq894 Length=6424 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||||||||||| ||||||||||| || || | | | || ||| Sbjct 3229 ACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCC 3288 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| ||||| ||||| ||||| || ||||||||||| || | ||||||||||| Sbjct 3289 AATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGG 3348 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | || |||||||| | ||||| ||||| Sbjct 3349 ATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTT 3408 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| |||||||||||||| Sbjct 3409 CCAGTCAAAGTCTTAACAAAGATTTGCAT 3437 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| ||| ||| | || || ||||| || || || || Sbjct 3986 CTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAA 4045 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| ||||||||||| ||||| | ||||||||| ||| Sbjct 4046 GATCAAACGCTGTTGGTCAGGAGGAATACCCTCCTTATCC 4085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395039833979245