Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 246 3e-60
seq4745 131 1e-25
seq5062 100 3e-16
seq894 100 3e-16
>seq4887
Length=16554
Score = 246 bits (272), Expect = 3e-60
Identities = 522/773 (68%), Gaps = 6/773 (1%)
Strand=Plus/Minus
Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161
|| ||||| | || | ||||| || ||| ||||| | ||| ||||| |||||| |
Sbjct 11016 ATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAA 10957
Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221
|| | || ||||| ||| | ||| | ||| | ||| | | ||||| | |
Sbjct 10956 GGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATG 10897
Query 23222 CGTCGCACGTACCTG--CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCAC 23279
||| ||| |||| |||| | |||||| || || | || || ||||| |||
Sbjct 10896 -GTCTTACG-ACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCAC 10839
Query 23280 CGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCA 23338
| || ||| || |||| ||| || ||| | || |||||||| |||| | ||
Sbjct 10838 CATAGACA-TCAGCCAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTC 10780
Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398
|||||||| || |||| || ||||| || ||||| || || ||||| || ||||| ||
Sbjct 10779 TTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCT 10720
Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458
| || |||||||||||| ||||||| | ||||| || || || || |||||||||
Sbjct 10719 CTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGC 10660
Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518
|| || || |||||||||||||| || || || | ||| || || || || ||||| ||
Sbjct 10659 CATGGTTCAAGGTAAACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATAT 10600
Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578
| || ||||||||| | |||| ||||| || |||| |||||| || ||| | |
Sbjct 10599 CTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTG 10540
Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638
|| || | | ||| | || || | |||| | || || ||| || || || |
Sbjct 10539 CCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCG 10480
Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698
|| || ||||| || || |||| ||| || ||||| || || || || |||||
Sbjct 10479 TTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCC 10420
Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758
|| | | | | ||| || || || | || || | || ||| | || ||||| |||
Sbjct 10419 TTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGT 10360
Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818
|| || ||||| ||||||||| || ||||| | ||||| || ||||||||
Sbjct 10359 GTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTT 10300
Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGG 23871
||||| || || ||||| ||||| | ||| || ||||| ||||| | ||| ||
Sbjct 10299 TCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 10247
>seq4745
Length=15183
Score = 131 bits (144), Expect = 1e-25
Identities = 205/293 (70%), Gaps = 3/293 (1%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || ||||| || ||||||| || ||| | || ||
Sbjct 9591 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATTTG 9532
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| |||||||| ||| ||| | | ||||| || |||| | | || ||
Sbjct 9531 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCATCTCT 9472
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||||||||||||||| ||||| || || || | |||||| |
Sbjct 9471 CACGTTCTCGCATTCTTCGCCGCATCCGATGGAATTGTCAATGAAAACCTTGTCGAACGC 9412
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||| || ||| | |||| || ||||||| ||||| || ||| | ||
Sbjct 9411 TTCAGTGGAGAGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAAATCATGATG 9352
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|||||| | || || |||| || ||||| ||||||||||| ||| | |||||
Sbjct 9351 GAAAACATCCACTCGGAAACATACTCGCTTCTCATCGATACATACATCAAGGA 9299
Score = 105 bits (116), Expect = 6e-18
Identities = 294/444 (66%), Gaps = 14/444 (3%)
Strand=Plus/Minus
Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038
|||| ||||| ||||| |||||||| ||||| || ||| || | || || |||
Sbjct 9126 TCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTCGCCTCTATTTTCTGGC 9067
Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098
| ||||| || ||| ||||| | || || || ||| ||||||| | || || || ||||
Sbjct 9066 TCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAGCTCATCTCCCGTGACG 9007
Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCGAC 58156
||||||| ||||| || || || ||||| | | ||| ||| ||| || | || |
Sbjct 9006 AGGGTCTTCATACCGACTTCGCCTGCCTGCTCTTCTCGCAC-TTG--AAGCATCGCCCAA 8950
Query 58157 GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215
|| | | | ||| |||| || ||||| ||| ||| || | || || | |
Sbjct 8949 GCAAACAAGCCGTTCAGGATGTTATTACAGAGGCTGTCCAGATTGAGCAAGAATTCTTGA 8890
Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275
| ||||| || || || | || || |||||| ||||||||| | |||||||
Sbjct 8889 CGGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATTTGATGAAGCAATACATTG 8830
Query 58276 AGTTTGTTGCCGACAGACTT----TTGCTCGAACTGATTGGAGAGCGTCATTACAACACG 58331
|||| || || ||| | ||| |||||| | || |||| || |||| |
Sbjct 8829 AGTTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAAT--GAGAAGGT--TTACCGATCA 8774
Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaa 58391
||||| || || || ||| | || || |||| |||||||| ||||| |||||
Sbjct 8773 GCCAATCCATTCGACTTCATGGAAAACATTTCTCTCGCAGGCAAGACCAACTTCTTCGAG 8714
Query 58392 aaaaaaGTTAGCGAATATCAAAAA 58415
|| |||| |||| || ||||||
Sbjct 8713 AAGCGAGTTGGCGACTACCAAAAA 8690
>seq5062
Length=19932
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || || ||||| |||||| | || || || | ||
Sbjct 11305 CATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTC 11246
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | |||| | |||||| | || ||| ||||| || | || || || ||
Sbjct 11245 CGACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCA 11186
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|| |||||||| ||||| ||||| || | ||||| ||| | |||||| ||
Sbjct 11185 ACAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAA 11126
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || ||||||||||| |||| ||
Sbjct 11125 CATCCAGAAGGAGTCGACTCTTCACTTGGTCCT 11093
>seq894
Length=6424
Score = 100 bits (110), Expect = 3e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| |||||||| || || || || ||||| | || ||||| | ||
Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | |||| | || ||| || | || |||||||||||| | || || || ||
Sbjct 3605 GATACTATCGACAACGT-AAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCA 3547
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|| ||||| || |||||||| || |||||||| || || || || || ||
Sbjct 3546 ACAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAA 3487
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||||||||| || |||||| | ||| |||| |||
Sbjct 3486 CATTCAAAAGGAGTCGACTTTACATTTGGTTCTT 3453
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || |||||| |||| || || || || || | || || ||| ||||
Sbjct 3437 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTAGAGGTGGAATCGTCA 3378
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | || | ||||| ||| ||| | |||||||| ||| | || ||||||||
Sbjct 3377 GATACCATTGATAACGTCAAGACAAAGA-TCCAAGACAAGGAGGGCATCCCACCCGACCA 3319
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|| || | || |||||||| || || ||||| || || ||| | ||||| ||
Sbjct 3318 ACAACGATTGATTTTCGCTGGAAAGCAATTGGAGGATGGTAGAACTCTTTCGGATTACAA 3259
Query 31372 CATTCAAAAAGA 31383
||||||||| ||
Sbjct 3258 CATTCAAAAGGA 3247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445725473072400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |