Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4887 246 3e-60 seq4745 131 1e-25 seq5062 100 3e-16 seq894 100 3e-16 >seq4887 Length=16554 Score = 246 bits (272), Expect = 3e-60 Identities = 522/773 (68%), Gaps = 6/773 (1%) Strand=Plus/Minus Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161 || ||||| | || | ||||| || ||| ||||| | ||| ||||| |||||| | Sbjct 11016 ATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAA 10957 Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221 || | || ||||| ||| | ||| | ||| | ||| | | ||||| | | Sbjct 10956 GGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATG 10897 Query 23222 CGTCGCACGTACCTG--CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCAC 23279 ||| ||| |||| |||| | |||||| || || | || || ||||| ||| Sbjct 10896 -GTCTTACG-ACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCAC 10839 Query 23280 CGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCA 23338 | || ||| || |||| ||| || ||| | || |||||||| |||| | || Sbjct 10838 CATAGACA-TCAGCCAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTC 10780 Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 |||||||| || |||| || ||||| || ||||| || || ||||| || ||||| || Sbjct 10779 TTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCT 10720 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 | || |||||||||||| ||||||| | ||||| || || || || ||||||||| Sbjct 10719 CTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGC 10660 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || || || |||||||||||||| || || || | ||| || || || || ||||| || Sbjct 10659 CATGGTTCAAGGTAAACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATAT 10600 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 | || ||||||||| | |||| ||||| || |||| |||||| || ||| | | Sbjct 10599 CTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTG 10540 Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638 || || | | ||| | || || | |||| | || || ||| || || || | Sbjct 10539 CCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCG 10480 Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698 || || ||||| || || |||| ||| || ||||| || || || || ||||| Sbjct 10479 TTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCC 10420 Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758 || | | | | ||| || || || | || || | || ||| | || ||||| ||| Sbjct 10419 TTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGT 10360 Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 || || ||||| ||||||||| || ||||| | ||||| || |||||||| Sbjct 10359 GTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTT 10300 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGG 23871 ||||| || || ||||| ||||| | ||| || ||||| ||||| | ||| || Sbjct 10299 TCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 10247 >seq4745 Length=15183 Score = 131 bits (144), Expect = 1e-25 Identities = 205/293 (70%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || ||||| || ||||||| || ||| | || || Sbjct 9591 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATTTG 9532 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | | ||||| || |||| | | || || Sbjct 9531 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCATCTCT 9472 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||||||||||||||| ||||| || || || | |||||| | Sbjct 9471 CACGTTCTCGCATTCTTCGCCGCATCCGATGGAATTGTCAATGAAAACCTTGTCGAACGC 9412 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||| || ||| | |||| || ||||||| ||||| || ||| | || Sbjct 9411 TTCAGTGGAGAGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAAATCATGATG 9352 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 |||||| | || || |||| || ||||| ||||||||||| ||| | ||||| Sbjct 9351 GAAAACATCCACTCGGAAACATACTCGCTTCTCATCGATACATACATCAAGGA 9299 Score = 105 bits (116), Expect = 6e-18 Identities = 294/444 (66%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| ||||| ||||| |||||||| ||||| || ||| || | || || ||| Sbjct 9126 TCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTCGCCTCTATTTTCTGGC 9067 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||| || ||| ||||| | || || || ||| ||||||| | || || || |||| Sbjct 9066 TCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAGCTCATCTCCCGTGACG 9007 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCGAC 58156 ||||||| ||||| || || || ||||| | | ||| ||| ||| || | || | Sbjct 9006 AGGGTCTTCATACCGACTTCGCCTGCCTGCTCTTCTCGCAC-TTG--AAGCATCGCCCAA 8950 Query 58157 GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 || | | | ||| |||| || ||||| ||| ||| || | || || | | Sbjct 8949 GCAAACAAGCCGTTCAGGATGTTATTACAGAGGCTGTCCAGATTGAGCAAGAATTCTTGA 8890 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 | ||||| || || || | || || |||||| ||||||||| | ||||||| Sbjct 8889 CGGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATTTGATGAAGCAATACATTG 8830 Query 58276 AGTTTGTTGCCGACAGACTT----TTGCTCGAACTGATTGGAGAGCGTCATTACAACACG 58331 |||| || || ||| | ||| |||||| | || |||| || |||| | Sbjct 8829 AGTTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAAT--GAGAAGGT--TTACCGATCA 8774 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaa 58391 ||||| || || || ||| | || || |||| |||||||| ||||| ||||| Sbjct 8773 GCCAATCCATTCGACTTCATGGAAAACATTTCTCTCGCAGGCAAGACCAACTTCTTCGAG 8714 Query 58392 aaaaaaGTTAGCGAATATCAAAAA 58415 || |||| |||| || |||||| Sbjct 8713 AAGCGAGTTGGCGACTACCAAAAA 8690 >seq5062 Length=19932 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || ||||| |||||| | || || || | || Sbjct 11305 CATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTC 11246 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | |||||| | || ||| ||||| || | || || || || Sbjct 11245 CGACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCA 11186 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || |||||||| ||||| ||||| || | ||||| ||| | |||||| || Sbjct 11185 ACAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAA 11126 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||||||||| |||| || Sbjct 11125 CATCCAGAAGGAGTCGACTCTTCACTTGGTCCT 11093 >seq894 Length=6424 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || ||||| | || ||||| | || Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | || ||| || | || |||||||||||| | || || || || Sbjct 3605 GATACTATCGACAACGT-AAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCA 3547 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || |||||||| || |||||||| || || || || || || Sbjct 3546 ACAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAA 3487 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| || |||||| | ||| |||| ||| Sbjct 3486 CATTCAAAAGGAGTCGACTTTACATTTGGTTCTT 3453 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| || || || || || | || || ||| |||| Sbjct 3437 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTAGAGGTGGAATCGTCA 3378 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| ||| ||| | |||||||| ||| | || |||||||| Sbjct 3377 GATACCATTGATAACGTCAAGACAAAGA-TCCAAGACAAGGAGGGCATCCCACCCGACCA 3319 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || || | || |||||||| || || ||||| || || ||| | ||||| || Sbjct 3318 ACAACGATTGATTTTCGCTGGAAAGCAATTGGAGGATGGTAGAACTCTTTCGGATTACAA 3259 Query 31372 CATTCAAAAAGA 31383 ||||||||| || Sbjct 3258 CATTCAAAAGGA 3247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445725473072400