Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4745 129 1e-24 >seq4745 Length=15183 Score = 129 bits (142), Expect = 1e-24 Identities = 164/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGC 101907 ||| |||||||||| | |||||| ||| ||||| | || ||| | || || Sbjct 9197 CATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAACTCTACCTTTGC 9138 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||| | || || || ||||| |||||||| |||||||| |||||| | ||||| || Sbjct 9137 TCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTCGCCTC 9078 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||||||||| ||||||| | || | || |||||||||||| ||||| ||| |||| Sbjct 9077 TATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAGCTCAT 9018 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || | ||||| ||||||||| |||||| || ||| |||| || Sbjct 9017 CTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTGCTCTT 8973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989490872414475