Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4887 300 2e-76 seq4745 134 2e-26 >seq4887 Length=16554 Score = 300 bits (332), Expect = 2e-76 Identities = 1314/2062 (64%), Gaps = 43/2062 (2%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| || ||||| || | | ||||| |||||||||||||| || || ||| Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | ||||||| ||||||||| || | ||| | || || || Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 11884 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 ||||| ||||| |||||| |||||||||||| || || | |||||| ||||| | | Sbjct 11883 TGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACA 11824 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || | ||| | |||||||||| ||| || || | ||| | || |||| | | Sbjct 11823 ATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATG 11764 Query 62286 TTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | || ||||| |||||||| || | || || | ||||| || | ||| | Sbjct 11763 TTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 11704 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || | | | ||| ||| | | || || ||||| || |||||||| ||||| Sbjct 11703 CAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCG 11644 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | || || | || | || || || || || || || | | || || || Sbjct 11643 GCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCG 11584 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 | |||||||| || ||||| |||||||| || || | ||||| || | || ||| Sbjct 11583 AGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACC- 11525 Query 62523 TATGTTC--TGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 ||||| |||| | || || ||||||| ||| ||||| | || |||| Sbjct 11524 -ATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACAC 11466 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCA 62636 |||||| || ||| || ||||| | || || | || || ||| Sbjct 11465 CCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAAC----CTTCGTAGGTCTCA 11410 Query 62637 TATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62696 ||||| || || || || | | | | || || ||||||| || ||||| Sbjct 11409 TATGGGCCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTC 11350 Query 62697 TCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 62756 || || |||| | || |||| || || || || ||| ||||| || | ||| Sbjct 11349 TCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGC 11291 Query 62757 -ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815 | || || || || | || |||||||||| | | ||||||| || | ||| Sbjct 11290 CAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACT 11231 Query 62816 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62875 || ||||||||| | |||||| || || || || ||||| || || | |||||||| Sbjct 11230 CTTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGAC 11171 Query 62876 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATT---AC 62929 || |||| || || || | || || | |||||| | || | || | || || Sbjct 11170 AACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGAC 11111 Query 62930 AAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATA 62989 ||| | | |||| ||| |||| ||||| || ||||||| | | | || Sbjct 11110 AAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTA 11051 Query 62990 TTGTATTATCTCAGTGCAAAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 || | || || ||||| | || |||| ||| || || | || | ||| || Sbjct 11050 TTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTTCTTTTGGTT 10994 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 |||||||||||| || ||||| || ||||| ||||| || | ||||| ||| |||| | Sbjct 10993 ACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGC 10934 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--CTTTCT 63164 || | || | | ||| | | ||||||| || | || | || | || | Sbjct 10933 CTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTC--TTACGACCTTTACCTTGT 10876 Query 63165 CTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 || ||||| ||| | ||||| || || || | |||| |||| | ||| Sbjct 10875 CTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGA 10816 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 ||||| | || ||||| | | ||| ||||||| | | || || ||||| |||||| Sbjct 10815 CATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 10756 Query 63285 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343 || |||||||| || || ||| || ||||| | || |||| |||||| || || || Sbjct 10755 TCTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTT 10697 Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403 |||| || || | |||| | | | ||| | |||||| ||||| | ||| | ||| | Sbjct 10696 CTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAA 10637 Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463 | ||||| || ||||| || || || || | |||||||||||||| || |||||| Sbjct 10636 TGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCG 10577 Query 63464 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGC 63523 | ||| |||| |||||||| || |||| || || || | || ||| | ||| | || Sbjct 10576 AAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGC 10517 Query 63524 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63583 ||| || | || ||||| || || || || | || || || | || || Sbjct 10516 ACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAAT 10457 Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 || || || |||||||| || || || ||||| || |||| | || || || || Sbjct 10456 CTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGA 10397 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 || | || | | ||| |||||| || | || ||||||||||| ||||| | Sbjct 10396 TGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTA 10337 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTC 63762 ||| | || | | ||||| || || || || || ||||| || | ||||| | Sbjct 10336 TTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGAATAC 10278 Query 63763 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCA 63822 | || || |||||||| | ||| || || || | |||| ||| || || | | Sbjct 10277 CAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGACGGA 10218 Query 63823 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63882 | ||| ||| || | ||| || || || || || | ||| |||||||| || | Sbjct 10217 GGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTGTCAT 10158 Query 63883 AAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCC--ATGGTAATACT 63940 ||| || | || ||||| | ||| || | | |||| | || | ||| | | || Sbjct 10157 AAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT--TCCT 10101 Query 63941 TG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCA 63999 || ||| || ||||| | | |||||||| ||||| |||| | ||| || | Sbjct 10100 TGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCGCTAA 10041 Query 64000 TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGG 64059 | || | ||| | || || |||| ||||| ||||| || | || || | || | Sbjct 10040 TGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGAGCAG 9981 Query 64060 CTAGAATGGCATAATCCGGATG 64081 ||||||||||||| || ||||| Sbjct 9980 CTAGAATGGCATAGTCGGGATG 9959 >seq4745 Length=15183 Score = 134 bits (148), Expect = 2e-26 Identities = 298/447 (67%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||| || ||||||||| || || || || || ||||| || || || || ||| | Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 | || || ||||||||||| || || ||||||| ||||| || | | || Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATTACC 8797 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 | || || | | ||||||||||| || || ||| ||||||| || | || Sbjct 8798 AAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTT 8857 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 ||| || | ||| | ||||||||| | || | |||||||| ||||| || || Sbjct 8858 CATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGC 8917 Query 33518 ATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACAT 33577 | ||| |||| | ||||| || || || || |||| || || || | Sbjct 8918 CTCTGTAATAACATCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGAAGAG 8977 Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || || ||||| ||| || ||||||||||| | || | ||||| ||||| || Sbjct 8978 CAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGT 9037 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| || | ||| | ||||||||| || ||||| || || || ||||| || || || Sbjct 9038 GAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAA 9097 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGC 33724 |||||| ||||| || ||||| || || Sbjct 9098 GAAGATACCTTCAACGGCAGCGAATGC 9124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629759774871600