Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 129 5e-25
>seq4887
Length=16554
Score = 129 bits (142), Expect = 5e-25
Identities = 379/584 (65%), Gaps = 0/584 (0%)
Strand=Plus/Minus
Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025
|| |||||||||||| || ||||| || | ||| ||| | | ||||| || || | |
Sbjct 10824 AAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTC 10765
Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085
|| || | ||| || | ||| | ||| || | ||| | |||| ||| || ||
Sbjct 10764 ATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTG 10705
Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145
|| ||||||| | | | || || || | ||| || ||||||||||| | |||
Sbjct 10704 CCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAA 10645
Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205
| | | ||| || || | || | ||| || || | | ||||||| | ||||| ||
Sbjct 10644 ACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTG 10585
Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265
| | || | |||||| || ||||| ||||| || |||||| | || | || || | |
Sbjct 10584 AAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCA 10525
Query 38266 CCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325
|| |||| || || | || | || || ||||| || | ||||| || | |
Sbjct 10524 CCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATA 10465
Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385
|| || || || |||||| | ||||| || ||||| || ||||| || | |
Sbjct 10464 GCACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGG 10405
Query 38386 AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445
|| || || | |||| | |||||| || || || | ||| ||||| || |||
Sbjct 10404 AAGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGT 10345
Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505
| || |||| | |||| | || |||||||| || || || |||||| | |||
Sbjct 10344 GTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG 10285
Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|||||||| | | || | ||| | ||| |||||||| | |||
Sbjct 10284 TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 10241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468481783566800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |