Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4887 129 5e-25 >seq4887 Length=16554 Score = 129 bits (142), Expect = 5e-25 Identities = 379/584 (65%), Gaps = 0/584 (0%) Strand=Plus/Minus Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || |||||||||||| || ||||| || | ||| ||| | | ||||| || || | | Sbjct 10824 AAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTC 10765 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085 || || | ||| || | ||| | ||| || | ||| | |||| ||| || || Sbjct 10764 ATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTG 10705 Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145 || ||||||| | | | || || || | ||| || ||||||||||| | ||| Sbjct 10704 CCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAA 10645 Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205 | | | ||| || || | || | ||| || || | | ||||||| | ||||| || Sbjct 10644 ACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTG 10585 Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265 | | || | |||||| || ||||| ||||| || |||||| | || | || || | | Sbjct 10584 AAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCA 10525 Query 38266 CCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325 || |||| || || | || | || || ||||| || | ||||| || | | Sbjct 10524 CCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATA 10465 Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385 || || || || |||||| | ||||| || ||||| || ||||| || | | Sbjct 10464 GCACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGG 10405 Query 38386 AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445 || || || | |||| | |||||| || || || | ||| ||||| || ||| Sbjct 10404 AAGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGT 10345 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 | || |||| | |||| | || |||||||| || || || |||||| | ||| Sbjct 10344 GTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG 10285 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||| | | || | ||| | ||| |||||||| | ||| Sbjct 10284 TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 10241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468481783566800