Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 300 2e-76
>seq4887
Length=16554
Score = 300 bits (332), Expect = 2e-76
Identities = 1317/2066 (64%), Gaps = 51/2066 (2%)
Strand=Plus/Minus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
||||||||||| || ||||| || | | ||||| |||||||||||||| || || |||
Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| | ||||||| ||||||||| || | ||| | || || ||
Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 11884
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
||||| ||||| |||||| |||||||||||| || || | |||||| ||||| | |
Sbjct 11883 TGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACA 11824
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078
|| | ||| | |||||||||| ||| || || | ||| | || |||| | |
Sbjct 11823 ATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATG 11764
Query 65079 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
|| | | || ||||| |||||||| || || || || | ||||| || | ||| |
Sbjct 11763 TTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 11704
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|| | | | ||| ||| | | || || || || || ||||| || |||||
Sbjct 11703 CAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCG 11644
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255
| || || | || | || || || || || || || | | | || || ||
Sbjct 11643 GCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCG 11584
Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315
| |||||||| || ||||| |||||||| || || | ||||| || | || |||
Sbjct 11583 AGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACC- 11525
Query 65316 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373
||||| |||| | || || ||||||| ||| ||||| | || |||
Sbjct 11524 -ATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACAC 11466
Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 65429
||| || ||| || ||||| | || || | || || ||
Sbjct 11465 CCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAAC----CTTCGTAGGTCTCA 11410
Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489
||||| || || || || | | | | || || ||||||| || |||||
Sbjct 11409 TATGGGCCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTC 11350
Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 65549
||||| |||| | || |||| || || || | ||| ||||| || | |||
Sbjct 11349 TCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGC 11291
Query 65550 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608
| || || || || | || |||||||||| | | ||||||| || | |||
Sbjct 11290 CAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACT 11231
Query 65609 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 65668
|| ||||||||| | |||||| || || || || ||||| || || | ||||||||
Sbjct 11230 CTTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGAC 11171
Query 65669 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATT---AC 65722
|| |||| || || || | || || | |||||| | || |||| | || ||
Sbjct 11170 AACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGAC 11111
Query 65723 AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 65782
||| | | |||| ||| |||| ||||| || ||||||| | | | ||
Sbjct 11110 AAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTA 11051
Query 65783 TTGTATTATCTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATT 65839
|| | || || ||||| | || |||| ||| || || | || | ||| ||
Sbjct 11050 TTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTTCTTTTGGTT 10994
Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899
|||||||||||| || ||||| || ||||| ||||| || | ||||| ||| |||| |
Sbjct 10993 ACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGC 10934
Query 65900 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT--TTCT 65957
|| | || | | ||| | | ||||||| || | || | || | || |
Sbjct 10933 CTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTC--TTACGACCTTTACCTTGT 10876
Query 65958 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 66017
|| ||||| | ||| | ||||| || || || | |||| |||| || |||
Sbjct 10875 CTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGA 10816
Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077
||||| | || ||||| | | ||| ||||||| | | || || ||||| ||||||
Sbjct 10815 CATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 10756
Query 66078 TCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136
|| |||||||| || || ||| || | ||| | | |||| |||||| || || ||
Sbjct 10755 TCTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTT 10697
Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196
|||| || || | |||| | | | ||| |||||| ||||| | ||| | ||| |
Sbjct 10696 CTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAA 10637
Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256
| ||||| || ||||| || || || || | |||||||||||||| || ||||||
Sbjct 10636 TGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCG 10577
Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316
| ||| |||| ||||| || || |||| || || || | || ||| ||| | ||
Sbjct 10576 AAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGC 10517
Query 66317 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376
||| || | || ||||| || || || || | || || || | || ||
Sbjct 10516 ACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAAT 10457
Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436
|| || ||||||||||| || || |||||||| ||| |||| | || || || ||
Sbjct 10456 CTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGA 10397
Query 66437 AGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 66492
|| | | ||| | || ||| |||||| || | || ||||||||||| ||||
Sbjct 10396 TGAAA---GCTGA-GCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAA 10341
Query 66493 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 66551
| |||| | || | | ||||| || || || || || ||||| || | |||
Sbjct 10340 AGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGA 10282
Query 66552 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611
|| || || || |||||||| | ||| || || || | |||| | | || || |
Sbjct 10281 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGA 10222
Query 66612 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 66671
| | ||| ||| || | ||| || || || || || | ||| ||||||||
Sbjct 10221 CGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTG 10162
Query 66672 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATGGTAA 66729
|| |||| || | |||||||||| ||| || | | |||| |||| | ||| |
Sbjct 10161 TCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT-- 10105
Query 66730 TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCC 66788
| |||| ||| || ||||| | | |||||||| ||||| |||| | ||| ||
Sbjct 10104 TCCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCG 10045
Query 66789 TCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 66848
|| || | ||| | || || |||| |||||| ||||| || || || || | |
Sbjct 10044 CTAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGA 9985
Query 66849 GCGGCTATAATGGCATAATCCGGATG 66874
|| |||| ||||||||| || |||||
Sbjct 9984 GCAGCTAGAATGGCATAGTCGGGATG 9959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658112371509800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |